Motif IL_48070.1 Version IL_48070.1 of this group appears in releases 1.17 to 1.17
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | break | 3 | 4 | 5 | 6 | 7 | 1-4 | 1-7 | 2-3 | 2-6 | 3-5 | 4-6 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_1KOG_002 | 1KOG | 0.2697 | 1 | J | Threonyl-tRNA synthetase mRNA | A | 74 | G | 76 | * | C | 96 | C | 97 | A | 98 | C | 99 | U | 100 | tHW | cWW | cWW | cSW | ncSH | ncSH | |
| 2 | IL_4IOA_028 | 4IOA | 0.0000 | 2 | C-loop | X | LSU rRNA | A | 921 | C | 924 | * | G | 877 | C | 878 | A | 879 | C | 880 | U | 881 | tHW | cWW | cWW | cSW | tSW | cSH |
| 3 | IL_4QCN_029 | 4QCN | 0.0962 | 2 | A | LSU rRNA | A | 955 | C | 958 | * | G | 911 | C | 912 | A | 913 | C | 914 | U | 915 | tHW | cWW | cWW | cSW | tSW | cSH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| AAAC*GCACU | 2 |
| AUG*CCACU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AA*CAC | 2 |
| U*CAC | 1 |
Release history
| Release | 1.17 |
|---|---|
| Date | 2014-09-04 |
| Status | New id, 1 parent |
Parent motifs
| Parent motif | Common motif instances | Only in IL_48070.1 | Only in the parent motif |
|---|---|---|---|
| IL_73276.7 Compare | IL_4IOA_028, IL_1KOG_002 | IL_4QCN_029 | IL_4A1C_005, IL_4CUV_045, IL_1VW3_027, IL_2AW7_018, IL_1FJG_047, IL_3U5H_042, IL_4CUX_024, IL_2QBG_102, IL_3U5F_060, IL_1VW3_085, IL_4NVV_100, IL_4MGN_003, IL_4BPP_057, IL_4IOA_049, IL_1S72_091, IL_1FJG_015, IL_4JRC_003, IL_4A1B_046, IL_4NVV_050, IL_2QBG_033, IL_1S72_051, IL_2QBG_050, IL_4NVV_031, IL_4IOA_097 |
Children motifs
| Child motif | Common motif instances | Only in IL_48070.1 | Only in the child motif |
|---|---|---|---|
| IL_73276.9 Compare | IL_4QCN_029, IL_4IOA_028, IL_1KOG_002 | IL_4A1C_005, IL_4CUV_045, IL_1VW3_027, IL_2AW7_018, IL_1FJG_047, IL_4W23_055, IL_4QCN_047, IL_4CUX_024, IL_2QBG_102, IL_3U5F_060, IL_1VW3_085, IL_4QCN_101, IL_1VX6_047, IL_4MGN_003, IL_4BPP_057, IL_4IOA_049, IL_3U5H_042, IL_4W21_093, IL_1S72_091, IL_1FJG_015, IL_2QBG_033, IL_4A1B_046, IL_4W23_023, IL_4W21_067, IL_4JRC_003, IL_1S72_051, IL_2QBG_050, IL_4IOA_097 |
- Annotations
-
- (2)
- C-loop (1)
- Basepair signature
- cWW-tHW-cSW-tSW-cWW
- Heat map statistics
- Min 0.10 | Avg 0.15 | Max 0.29
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