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Motif IL_48076.4 Version IL_48076.4 of this group appears in releases 3.94 to 3.94

#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3break 4 51-31-52-32-43-4
1 IL_8P9A_2938P9A0.58421Major groove platform relatedAR LSU rRNAU1819U1820C1822*G1623G1624ncWWncSHcWW
2 IL_5J7L_2645J7L0.43020Major groove platformDA LSU rRNAG738A739C740*G757C758cWWcSHcWW
3 IL_4WF9_0264WF90.33790Major groove platformX LSU rRNAG783A784C785*G802C803cWWcSHcWW
4 IL_4V9F_0444V9F0.29951Major groove platform0 LSU rRNAA1191A1193A1194*U1205U1206cWWcSHntSHcWW
5 IL_5J7L_3855J7L0.39271Major groove platformDA LSU rRNAG1087A1089A1090*U1101C1102cWWncWW
6 IL_3OXE_0033OXE0.20450Major groove platformAdomain II of glycine riboswitchC68U69C70*G35G36cWWcSHcWW
7 IL_6CZR_4076CZR0.23520Major groove platform1a SSU rRNAG578G579C580*G628C629cWWntSHncWW
8 IL_4LFB_0244LFB0.20310Major groove platformA SSU rRNAG594G595C596*G644C645cWWncSHntSHcWW
9 IL_7A0S_0857A0S0.30040Major groove platformX LSU rRNAU2436G2437A2438*U2472G2473cWWntSHcWW
10 IL_9DFE_0939DFE0.28340Major groove platform1A LSU rRNAU2457G2458A2459*U2493G2494ncWWtSHcWW
11 IL_4WF9_0914WF90.32080Major groove platformX LSU rRNAU2484U2485A2486*U2520G2521cWWcSHcWW
12 IL_9FN2_0039FN20.25260BSAMURI-SAMG33C34A35*U12C13cWWcSHcWW
13 IL_9FN3_0039FN30.24610BSAMURI-ProSeDMAG33C34A35*U12C13cWWcSHcWW
14 IL_4OQU_0024OQU0.19420Major groove platformASAM-I/IV riboswitchC42A43A44*U29G30cWWncSHcWW
15 IL_1S03_0041S030.19540Major groove platformA47-MERC34A35A36*U16G17cWWcSHtSHcWW
16 IL_1S03_0081S030.20210Major groove platformB47-MERC34A35A36*U16G17cWWcSHtSHcWW
17 IL_8TSV_0018TSV0.13130Major groove platformA+BZika virus stem-loop A (SLA) top stemU6G7C8*G19A20cWWncSHtSHcWW
18 IL_5J7L_0285J7L0.16460Major groove platformAA SSU rRNAU594A595A596*U644G645cWWcSHntSHcWW
19 IL_1I6U_0011I6U0.16390Major groove platformC16S RRNA FRAGMENTU9A10A11*U28G29cWWcSHntSHcWW
20 IL_5J7L_3205J7L0.19520Major groove platformDA LSU rRNAC2050A2051A2052*U2617G2618cWWcSHtSHcWW
21 IL_9DFE_0789DFE0.21640Major groove platform1A LSU rRNAC2050A2051G2052*C2617G2618cWWcSHcWW
22 IL_4WF9_0784WF90.23160Major groove platformX LSU rRNAC2077A2078G2079*C2644G2645cWWcSHcWW
23 IL_7A0S_0737A0S0.20540Major groove platformX LSU rRNAC2033A2034G2035*C2596G2597cWWcSHcWW
24 IL_5VOE_0055VOE0.22060Major groove platformAAptamer 11F7t (36-MER)UFT24G25G26*CFL12G13cWWncSHcWW
25 IL_8P9A_3298P9A0.17350Major groove platformAR LSU rRNAU2865U2866C2867*G2823G2824ncSHcWWcWW
26 IL_7A0S_0847A0S0.11270Major groove platformX LSU rRNAC2475A2476C2477*G2433G2434cWWcSHcWW
27 IL_9DFE_0929DFE0.00000Major groove platform1A LSU rRNAC2496A2497C2498*G2454G2455cWWcSHcWW
28 IL_4V9F_0824V9F0.09930Major groove platform0 LSU rRNAU2531A2532C2533*G2489A2490cWWcSHcWW
29 IL_5J7L_3925J7L0.08490Major groove platformDA LSU rRNAC2496A2497OMC2498*G2454G2455cWWcSHcWW
30 IL_4WF9_0904WF90.11700Major groove platformX LSU rRNAC2523A2524C2525*G2481G2482cWWcSHcWW
31 IL_7A0S_0827A0S0.14040Major groove platformX LSU rRNAU2380A2381C2382*G2393G2394cWWcSHcWW
32 IL_9DFE_0909DFE0.17260Major groove platform1A LSU rRNAU2401C2402C2403*G2414G2415cWWncSHcWW
33 IL_1XJR_0021XJR0.19460Major groove platformAs2m RNAU37A38C39*G13G14cWWcSHcWW
34 IL_9DFE_0089DFE0.21600Major groove platform1A LSU rRNAU363|||EA363|||FC364*G272|||DG272|||EcWWncSHcWW
35 IL_7EOG_0017EOG0.22360Major groove platformAPepper (49-MER)C5A6C7*G44G45cWWcSHcWW
36 IL_7EOM_0017EOM0.22070Major groove platformAPepper (49-MER)C5A6C7*G44G45cWWncSHcWW
37 IL_5Y85_0055Y850.22610Major groove platformD+CDNA/RNA (50-MER)C40G41C42*G9G10cWWcWW
38 IL_4LFB_0284LFB0.26470Major groove platformA SSU rRNAC747C748C749*G657G658cWWcWW
39 IL_1G1X_0051G1X0.26060Major groove platformJ+I16S RIBOSOMAL RNAC747C748C749*G657G658cWWncSHcWW
40 IL_1G1X_0021G1X0.25780Major groove platformE+D16S RIBOSOMAL RNAC747C748C749*G657G658cWWncSHcWW
41 IL_5T5A_0025T5A0.18740Major groove platformADNA/RNA (71-MER)C50G51C52*G10G11cWWncSHcWW
42 IL_6CZR_1406CZR0.32630Major groove platform1a SSU rRNAC731C732C733*G641G642cWWcWW
43 IL_3SUX_0023SUX0.46950Major groove platformX THF riboswitchU47G48U49*G37A38ncWWcWW

3D structures

Complete motif including flanking bases
SequenceCounts
CAC*GG5
CAA*UG4
CCC*GG4
CAG*CG3
UAC*GG3
GAC*GC2
GGC*GC2
UGA*UG2
GCA*UC2
UAA*UG2
CGC*GG2
UUUC*GG1
AAAA*UU1
GAAA*UC1
CUC*GG1
UUA*UG1
UGC*GA1
(UFT)GG*(CFL)G1
UUC*GG1
UAC*GA1
CA(OMC)*GG1
UCC*GG1
UGU*GA1
Non-Watson-Crick part of the motif
SequenceCounts
A*21
G*9
C*7
U*3
AA*2
UU*1

Release history

Release3.94
Date2025-02-26
StatusUpdated, 1 parent

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • Major groove platform (40)
  • (2)
  • Major groove platform related (1)
    • Basepair signature
    cWW-cSH-cWW
    Heat map statistics
    Min 0.04 | Avg 0.31 | Max 0.92
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