Motif IL_48256.2 Version IL_48256.2 of this group appears in releases 1.18 to 1.18

Download

Csv

Json

Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name		1		2	break		3		4	1-4	2-3	2-4
1	IL_4A1B_036	4A1B	0.5176	1		1	26S RRNA	A	920	U	922	*	A	853	U	854	cWW	cWW
2	IL_4C7O_001	4C7O	0.4152	1	Single bulged U	E	SRP RNA	G	38	A	40	*	U	7	C	8	cWW	cWW
3	IL_3P49_003	3P49	0.4206	1		A	Glycine riboswitch	G	13	U	15	*	A	30	C	31	cWW	cWW
4	IL_4CUV_149	4CUV	0.4237	2		1	25S RRNA	G	3353	G	3356	*	C	3349	C	3350	cWW	cWW
5	IL_3U5H_030	3U5H	0.4917	1		5	25S rRNA	A	895	U	897	*	A	828	U	829	cWW	cWW
6	IL_1S72_026	1S72	0.5049	1		0	LSU rRNA	G	856	U	858	*	A	788	C	789	cWW	cWW
7	IL_2QBG_038	2QBG	0.5025	1		B	23S rRNA	G	1011	C	1013	*	G	1149	C	1150	cWW	cWW
8	IL_4QCN_037	4QCN	0.4817	1		A	23S Ribosomal RNA	G	1057	C	1059	*	G	1195	C	1196	cWW	cWW
9	IL_3U5H_136	3U5H	0.4543	1		5	25S rRNA	G	3318	A	3320	*	U	3387	C	3388	cWW	cWW
10	IL_3U5F_018	3U5F	0.4780	1		6	18S rRNA	G	279	G	281	*	C	275	C	276	cWW	cWW
11	IL_3SUX_001	3SUX	0.4400	1	Single bulged G	X	THF riboswitch	G	76	U	78	*	G	20	C	21	cWW	cWW
12	IL_4LVZ_002	4LVZ	0.4311	1		A	THF riboswitch	G	67	U	69	*	G	17	C	18	cWW	cWW
13	IL_4W21_057	4W21	0.4907	1		5	28S ribosomal RNA	G	1576	U	1578	*	G	1550	C	1551	cWW	cWW
14	IL_4CUV_034	4CUV	0.4975	1		1	25S RRNA	G	859	C	861	*	G	833	U	834	cWW	cWW
15	IL_4QCN_020	4QCN	0.4748	1		A	23S Ribosomal RNA	G	775	C	777	*	G	749	U	750	cWW	cWW
16	IL_1S72_027	1S72	0.3912	1	Single bulged G (H)	0	LSU rRNA	A	819	U	821	*	A	793	U	794	cWW	cWW
17	IL_4CUV_142	4CUV	0.3823	1		1	25S RRNA	G	3318	A	3320	*	U	3387	C	3388	cWW	cWW
18	IL_4CUV_136	4CUV	0.3830	1		1	25S RRNA	G	3197	G	3199	*	C	3193	C	3194	cWW	cWW
19	IL_4IOA_016	4IOA	0.3875	1	Single bulged G	X	LSU rRNA	G	741	A	743	*	U	715	U	716	cWW	cWW
20	IL_2QBG_023	2QBG	0.3384	1		B	23S rRNA	G	728	A	730	*	U	702	U	703	cWW	cWW
21	IL_1VX6_037	1VX6	0.3040	1		A	28S ribosomal RNA	G	978	A	980	*	U	952	U	953	cWW	cWW
22	IL_4QCN_055	4QCN	0.3997	1		A	23S Ribosomal RNA	G	1506	G	1508	*	C	1498	C	1499	cWW	cWW
23	IL_4IOA_015	4IOA	0.3819	1	Single bulged A	X	LSU rRNA	G	776	G	778	*	C	710	C	711	cWW	cWW
24	IL_4IOA_034	4IOA	0.3424	1	Single bulged U	X	LSU rRNA	A	1022	G	1024	*	C	1160	U	1161	cWW	cWW
25	IL_3OWZ_001	3OWZ	0.3485	1		A	Domain II of glycine riboswitch	G	12	A	14	*	U	27	C	28	cWW	cWW
26	IL_2QBG_069	2QBG	0.3032	1		B	23S rRNA	G	1731	G	1733	*	C	1727	C	1728	cWW	cWW
27	IL_4QCN_019	4QCN	0.3276	1		A	23S Ribosomal RNA	G	810	G	812	*	C	744	C	745	cWW	cWW
28	IL_3U5H_055	3U5H	0.3775	1		5	25S rRNA	A	1180	A	1182	*	U	1324	U	1325	cWW	cWW
29	IL_4CUV_056	4CUV	0.3304	1		1	25S RRNA	A	1180	A	1182	*	U	1324	U	1325	cWW	cWW
30	IL_1VW3_069	1VW3	0.3585	1		A	21S ribosomal RNA	A	2304	U	2306	*	A	2287	U	2288	cWW	cWW
31	IL_4A1B_124	4A1B	0.2823	1		1	26S RRNA	G	3158	A	3160	*	U	3179	C	3180	cWW	cWW
32	IL_4CUV_150	4CUV	0.1803	1		3	5S RRNA	A	63	G	65	*	C	15	U	16	cWW	cWW
33	IL_4A1B_095	4A1B	0.1959	1		1	26S RRNA	G	2404	U	2406	*	A	2799	C	2800	cWW	cWW
34	IL_1S72_030	1S72	0.2024	1	Single bulged U (H)	0	LSU rRNA	G	834	G	836	*	C	847	C	848	cWW	cWW
35	IL_3U5H_098	3U5H	0.2053	1		5	25S rRNA	G	2409	U	2411	*	A	2811	C	2812	cWW	cWW
36	IL_1VW3_018	1VW3	0.2428	1		A	21S ribosomal RNA	U	654	A	656	*	U	606	A	607	cWW	cWW
37	IL_4W21_123	4W21	0.2688	1		5	28S ribosomal RNA	G	3913	U	3915	*	A	4388	C	4389	cWW	cWW
38	IL_3U5H_142	3U5H	0.2621	2		5	25S rRNA	G	3353	G	3356	*	C	3349	C	3350	cWW	cWW
39	IL_4R0D_008	4R0D	0.3218	1		A	Group II catalytic intron	G	312	A	314	*	U	161	C	162	cWW	ncWW
40	IL_4CUV_101	4CUV	0.2068	1		1	25S RRNA	G	2409	U	2411	*	A	2811	C	2812	cWW	cWW
41	IL_4IOA_002	4IOA	0.2278	1	Single bulged A	X	LSU rRNA	G	454	C	456	*	G	36	C	37	cWW	cWW
42	IL_4QCN_002	4QCN	0.2187	1		A	23S Ribosomal RNA	G	468	C	470	*	G	36	C	37	cWW	cWW
43	IL_1NBS_005	1NBS	0.2144	1	Single bulged A	B	RNase P class B	G	129	C	131	*	G	113	C	114	cWW	cWW
44	IL_1VX6_100	1VX6	0.1986	1		A	28S ribosomal RNA	G	2702	U	2704	*	A	3170	C	3171	cWW	cWW
45	IL_3OWZ_005	3OWZ	0.2231	1		B	Domain II of glycine riboswitch	G	12	A	14	*	U	27	C	28	cWW	cWW
46	IL_1VX6_058	1VX6	0.2527	1		A	28S ribosomal RNA	A	1308	A	1310	*	U	1452	U	1453	cWW	cWW
47	IL_3U5H_003	3U5H	0.2332	1		5+8	25S rRNA + 5.8S rRNA	A	13	C	15	*	G	144	U	145	cWW	cWW
48	IL_4CUV_003	4CUV	0.2672	1		1+4	25S RRNA + 5.8S RRNA	A	13	C	15	*	G	144	U	145	ncWW	cWW
49	IL_4W21_032	4W21	0.2451	1		5	28S ribosomal RNA	G	1287	C	1289	*	G	708	C	709		cWW
50	IL_4W21_002	4W21	0.2749	1		5+8	28S ribosomal RNA + 5.8S ribosomal RNA	A	12	C	14	*	G	143	U	144		cWW
51	IL_4W21_077	4W21	0.3092	6		5	28S ribosomal RNA	C	1911	U	1918	*	G	2064	G	2065	ncWW	cWW
52	IL_4W23_054	4W23	0.3222	1		2	18S ribosomal RNA	G	1206	A	1208	*	U	1691	U	1692	cWW	cWW
53	IL_4BPP_055	4BPP	0.2643	1		A	18S RRNA	G	1122	A	1124	*	U	1599	U	1600	cWW	cWW
54	IL_3U5H_089	3U5H	0.2615	1		5	25S rRNA	G	2323	G	2325	*	C	2128	U	2129	cWW	cWW
55	IL_4CUV_089	4CUV	0.2882	1		1	25S RRNA	G	2323	G	2325	*	C	2128	U	2129	cWW	cWW
56	IL_3U5F_059	3U5F	0.2374	1		6	18S rRNA	G	1149	A	1151	*	U	1627	U	1628	cWW	cWW
57	IL_3J7A_052	3J7A	0.1967	1	Single bulged G (H)	A	SSU rRNA	G	1250	A	1252	*	U	1924	U	1925	cWW	cWW
58	IL_1VX6_103	1VX6	0.2203	1		A	28S ribosomal RNA	A	2809	A	2811	*	U	2738	U	2739	cWW	cWW
59	IL_1VW3_088	1VW3	0.1601	1		A	21S ribosomal RNA	U	3038	U	3040	*	A	2970	A	2971	cWW	cWW
60	IL_3DHS_002	3DHS	0.2137	1		A	RNase P RNA	G	51	C	53	*	G	395	C	396	cWW	cWW
61	IL_3U5H_026	3U5H	0.1938	1		5	25S rRNA	A	775	U	777	*	A	755	U	756	cWW	cWW
62	IL_4IOA_057	4IOA	0.2212	1	Single bulged C	X	LSU rRNA	G	1488	U	1490	*	A	1534	C	1535	cWW	cWW
63	IL_3U5H_129	3U5H	0.2530	1		5	25S rRNA	G	3177	U	3179	*	A	3210	C	3211	cWW	cWW
64	IL_3U5H_013	3U5H	0.3092	1		5	25S rRNA	G	189	U	191	*	A	204	C	205	cWW	cWW
65	IL_4A1B_011	4A1B	0.2516	1		1	26S RRNA	G	189	U	191	*	A	204	C	205	cWW	cWW
66	IL_4CUV_134	4CUV	0.2200	1		1	25S RRNA	G	3177	U	3179	*	A	3210	C	3211	cWW	cWW
67	IL_1NBS_001	1NBS	0.2752	1	Single bulged A (H)	A	RNase P class B	G	129	C	131	*	G	113	C	114	cWW	cWW
68	IL_4A1B_100	4A1B	0.3266	1		1	26S RRNA	A	2561	U	2563	*	A	2557	U	2558	cWW	cWW
69	IL_4CUX_031	4CUX	0.3283	1		2	18S RRNA	G	557	C	559	*	G	586	C	587	cWW	cWW
70	IL_4W23_024	4W23	0.3344	1		2	18S ribosomal RNA	G	506	A	508	*	U	495	C	496	ncWW	cWW
71	IL_4CUV_016	4CUV	0.3116	1		1	25S RRNA	G	189	U	191	*	A	204	C	205	cWW	cWW
72	IL_1VX6_001	1VX6	0.2203	1		A+C	28S ribosomal RNA + 5.8S ribosomal RNA	G	13	U	15	*	A	151	C	152	cWW	cWW
73	IL_4BPP_072	4BPP	0.2621	1		A	18S RRNA	G	1343	A	1345	*	U	1322	C	1323	cWW	cWW
74	IL_4W21_014	4W21	0.3379	1		5	28S ribosomal RNA	G	199	C	201	*	G	214	C	215	cWW	cWW
75	IL_1VW3_091	1VW3	0.4119	2		A	21S ribosomal RNA	A	3123	C	3126	*	G	3259	U	3260	cWW	cWW
76	IL_3U5H_152	3U5H	0.3732	1		8	5.8S rRNA	A	89	C	91	*	G	68	U	69	cWW	cWW
77	IL_4CUV_158	4CUV	0.3727	1		4	5.8S RRNA	A	89	C	91	*	G	68	U	69	cWW	cWW
78	IL_1S72_045	1S72	0.3360	2	Bulged stacked bases (H)	0	LSU rRNA	A	1286	C	1289	*	G	1269	U	1270	cWW	cWW
79	IL_4A1C_002	4A1C	0.3389	1		2	5.8S RRNA	G	90	C	92	*	G	71	C	72	cWW	cWW
80	IL_4IOA_011	4IOA	0.3471	1	Single bulged A	X	LSU rRNA	G	600	C	602	*	G	678	C	679	cWW	cWW
81	IL_3J7A_025	3J7A	0.2946	1		A	SSU rRNA	G	564	C	566	*	G	593	C	594	cWW	cWW
82	IL_3SNP_001	3SNP	0.3487	1		C	ferritin H IRE RNA	G	7	U	9	*	A	24	C	25	cWW	cWW
83	IL_1DUQ_002	1DUQ	0.2812	1	Single bulged A	B+A	THE REV BINDING ELEMENT	G	120	C	122	*	G	108	C	109	cWW	cWW
84	IL_1CSL_002	1CSL	0.3013	1	Single bulged A	B+A	RNA (15-mer)	G	67	C	69	*	G	50	C	51	cWW	cWW
85	IL_4BPP_030	4BPP	0.3101	1		A	18S RRNA	G	550	C	552	*	G	580	C	581	cWW	cWW
86	IL_2OIU_003	2OIU	0.2883	1	Single bulged U	Q	L1 Ribozyme RNA Ligase	G	18	U	20	*	A	41	C	42	cWW	cWW
87	IL_3W3S_001	3W3S	0.3218	1	Single bulged C	B	Selenocysteine transfer RNA	G	11	C	12	*	G	23	C	24	cWW	cWW
88	IL_1U9S_001	1U9S	0.3186	1	Single bulged A	A	RIBONUCLEASE P	G	107	C	109	*	G	95	C	96	cWW	cWW
89	IL_2PJP_001	2PJP	0.2879	1	Single bulged U	B	SECIS RNA	G	16	U	18	*	A	29	C	30	cWW	cWW
90	IL_1VW3_052	1VW3	0.3351	1		A	21S ribosomal RNA	G	1880	U	1882	*	A	1677	C	1678	cWW	cWW
91	IL_4QCN_065	4QCN	0.3808	1		A	23S Ribosomal RNA	G	2002	C	2004	*	G	1801	C	1802	cWW	cWW
92	IL_1S72_014	1S72	0.2611	1	Single bulged U (H)	0	LSU rRNA	G	307	C	309	*	G	322	C	323	cWW	cWW
93	IL_3U5F_031	3U5F	0.3123	1		6	18S rRNA	G	557	C	559	*	G	586	C	587	cWW	cWW
94	IL_2OIU_001	2OIU	0.2549	1		P	L1 Ribozyme RNA Ligase	G	18	U	20	*	A	41	C	42	cWW	cWW
95	IL_3U5H_014	3U5H	0.3405	1		5+8	25S rRNA + 5.8S rRNA	G	337	C	339	*	G	25	U	26	cWW	cWW
96	IL_4CUV_017	4CUV	0.3528	1		1+4	25S RRNA + 5.8S RRNA	G	337	C	339	*	G	25	U	26	cWW	cWW
97	IL_1VX6_016	1VX6	0.3457	1		A+C	28S ribosomal RNA + 5.8S ribosomal RNA	G	345	C	347	*	G	29	U	30	cWW	cWW
98	IL_1FJG_002	1FJG	0.3993	1	Single bulged A (H)	A	SSU rRNA	G	396	C	398	*	G	44	U	45	cWW	cWW
99	IL_4BPP_016	4BPP	0.3952	1		A	18S RRNA	G	262	U	264	*	A	279	U	280	cWW	cWW
100	IL_4W21_017	4W21	0.3699	1		5+8	28S ribosomal RNA + 5.8S ribosomal RNA	G	348	C	350	*	G	25	C	26	cWW	cWW
101	IL_4A1B_101	4A1B	0.3708	1		1	26S RRNA	A	2614	U	2616	*	G	2603	U	2604	cWW	cWW
102	IL_2QBG_070	2QBG	0.4081	1		B	23S rRNA	G	1980	U	1982	*	G	1770	C	1771	cWW	cWW
103	IL_4IOA_064	4IOA	0.4559	1	Single bulged A	X	LSU rRNA	G	1963	U	1965	*	G	1761	C	1762	cWW	cWW
104	IL_3R2D_001	3R2D	0.4807	2	Multiple bulged bases	R+S	RNA (12-mer)	G	2	C	5	*	G	10	C	11	cWW	cWW
105	IL_4CUX_017	4CUX	0.4262	1		2	18S RRNA	A	265	U	267	*	A	288	U	289	ncWW		ncWw
106	IL_1VW3_041	1VW3	0.2681	1		A	21S ribosomal RNA	A	1370	A	1372	*	U	1394	U	1395	cWW	cWW
107	IL_3U5F_026	3U5F	0.3265	1		6	18S rRNA	A	505	U	507	*	A	481	U	482	cWW	cWW
108	IL_4IOA_024	4IOA	0.3253	1	Single bulged C (H)	X	LSU rRNA	G	938	G	940	*	C	863	C	864	cWW	cWW
109	IL_4BPP_024	4BPP	0.3223	1		A	18S RRNA	G	450	A	452	*	U	439	C	440	cWW	cWW
110	IL_3U5H_039	3U5H	0.4222	1		5	25S rRNA	A	983	U	985	*	A	1099	U	1100	cWW	cWW
111	IL_4CUX_025	4CUX	0.3408	1		2	18S RRNA	G	458	A	460	*	U	447	C	448	cWW	cWW
112	IL_4CUV_042	4CUV	0.4078	1		1	25S RRNA	A	983	U	985	*	A	1099	U	1100	cWW	cWW
113	IL_4A1B_044	4A1B	0.3736	1		1	26S RRNA	A	1009	U	1011	*	A	1126	U	1127	cWW	cWW
114	IL_1VX6_044	1VX6	0.3994	1		A	28S ribosomal RNA	A	1105	U	1107	*	A	1226	U	1227	cWW	cWW
115	IL_3U5F_016	3U5F	0.3252	1		6	18S rRNA	A	265	U	267	*	A	288	U	289	cWW	cWW
116	IL_2A64_002	2A64	0.3669	1	Single bulged U	A	ribonuclease P RNA	G	51	C	53	*	G	395	C	396	cWW	cWW
117	IL_3J7A_014	3J7A	0.3653	1	Single bulged A (H)	A	SSU rRNA	A	266	C	268	*	G	294	U	295	cWW	cWW
118	IL_1S72_002	1S72	0.2890	1	Single bulged A (H)	0	LSU rRNA	G	448	C	450	*	G	33	C	34	cWW	cWW
119	IL_4QCN_044	4QCN	0.3963	1		A	23S Ribosomal RNA	G	1264	C	1266	*	G	1275	C	1276	cWW	cWW
120	IL_4O26_001	4O26	0.4119	1	Single bulged U	E	Telomerase TR	G	181	C	183	*	G	193	C	194	cWW	cWW
121	IL_4W21_133	4W21	0.4781	1		5	28S ribosomal RNA	G	4291	U	4293	*	A	4317	C	4318	cWW	cWW
122	IL_2XXA_012	2XXA	0.4219	1		G	SSRP RNA	G	71	U	73	*	A	26	C	27	cWW	cWW
123	IL_3U5H_105	3U5H	0.4748	1		5	25S rRNA	G	2714	U	2716	*	A	2740	C	2741	cWW	cWW
124	IL_1VX6_053	1VX6	0.5001	1		A	28S ribosomal RNA	A	1198	C	1200	*	G	1208	U	1209	cWW	cWW
125	IL_1GID_012	1GID	0.4525	1	Single bulged U	B	P4-P6 RNA RIBOZYME DOMAIN	G	129	U	131	*	A	192	C	193	cWW	cWW
126	IL_2XXA_010	2XXA	0.3845	1		G	SSRP RNA	G	82	C	84	*	G	17	C	18	cWW	cWW	ncwW
127	IL_4CUV_051	4CUV	0.4613	1		1	25S RRNA	U	1074	C	1076	*	G	1083	A	1084	cWW	cWW
128	IL_3U5H_050	3U5H	0.4182	1		5	25S rRNA	U	1074	C	1076	*	G	1083	A	1084	cWW	cWW
129	IL_3J7A_051	3J7A	0.4598	1	Single bulged A (H)	A	SSU rRNA	U	1927	C	1929	*	G	1247	A	1248	cWW	cWW
130	IL_3U5F_058	3U5F	0.4240	1		6	18S rRNA	U	1630	C	1632	*	G	1146	A	1147	cWW	cWW
131	IL_1FJG_035	1FJG	0.4220	1	Single bulged A (H)	A	SSU rRNA	U	1393	C	1395	*	G	922	A	923	cWW	cWW
132	IL_4BPP_054	4BPP	0.4267	1		A	18S RRNA	U	1602	C	1604	*	G	1119	A	1120	cWW	cWW
133	IL_2AW7_042	2AW7	0.3407	1		A	16S ribosomal RNA	U	1393	C	1395	*	G	922	A	923	cWW	cWW
134	IL_3U5F_009	3U5F	0.3418	2		6	18S rRNA	U	113	U	116	*	A	300	A	301	cWW	cWW
135	IL_3IVK_003	3IVK	0.4763	1		C	class I ligase product	G	46	U	48	*	A	112	C	113	ncWW	cWW
136	IL_4BPP_025	4BPP	0.3260	1		A	18S RRNA	C	498	U	500	*	A	473	G	474	cWW	cWW
137	IL_4W21_129	4W21	0.2948	1		5	28S ribosomal RNA	U	4202	C	4204	*	G	4191	A	4192	cWW	ncWW
138	IL_4CUX_063	4CUX	0.3678	1		2	18S RRNA	G	1268	G	1270	*	C	1440	C	1441	cWW	cWW
139	IL_4A1B_072	4A1B	0.3196	1		1	26S RRNA	G	1804	G	1806	*	U	1693	C	1694	cWW	cWW
140	IL_1ET4_004	1ET4	0.3776	1		B	RNA APTAMER, 35-MER	G	326	G	328	*	C	318	C	319	cWW	cWW
141	IL_1ET4_002	1ET4	0.3740	1	Major groove intercalation	A	RNA APTAMER, 35-MER	G	226	G	228	*	C	218	C	219	cWW	cWW
142	IL_2AW7_008	2AW7	0.3623	1		A	16S ribosomal RNA	U	93	C	95	*	G	75	G	76	cWW	cWW
143	IL_1VX6_033	1VX6	0.3201	1		A	28S ribosomal RNA	U	892	U	894	*	A	880	A	881	cWW	cWW
144	IL_4A1B_051	4A1B	0.4304	2		1	26S RRNA	U	1101	C	1104	*	G	1111	A	1112	cWW	cWW
145	IL_4FAW_004	4FAW	0.4111	1		A	Group II catalytic intron D1-D4-1	U	82	U	84	*	A	99	A	100	cWW	cWW
146	IL_1GID_005	1GID	0.4242	1		A	P4-P6 RNA RIBOZYME DOMAIN	G	129	U	131	*	A	192	C	193	cWW	cWW
147	IL_3Q1Q_004	3Q1Q	0.3631	2		B	RNase P RNA	C	205	C	208	*	G	108	G	109	cWW	cWW
148	IL_1S72_096	1S72	0.4375	1	Single bulged A (H)	0	LSU rRNA	C	2895	C	2897	*	G	2860	G	2861	cWW	cWW
149	IL_3UCZ_002	3UCZ	0.5580	1		R	RNA (92-MER)	C	52	C	54	*	G	86	G	87	cWW	cWW
150	IL_3IWN_003	3IWN	0.6103	1	Major groove intercalation	A	C-di-GMP riboswitch	C	42	C	44	*	G	81	G	82	cWW	cWW
151	IL_4A1B_105	4A1B	0.4647	1		1	26S RRNA	C	2760	U	2762	*	A	2774	G	2775	cWW	cWW
152	IL_1NBS_009	1NBS	0.4891	2	Major groove intercalation	B	RNase P class B	U	228	A	231	*	U	181	G	182	cWW	cWW
153	IL_1NBS_002	1NBS	0.4629	2	Major groove intercalation (H)	A	RNase P class B	U	228	A	231	*	U	181	G	182	cWW	cWW
154	IL_3U5H_093	3U5H	0.4952	1		5	25S rRNA	C	2204	G	2206	*	C	2237	G	2238	cWW	cWW
155	IL_1FJG_022	1FJG	0.4452	5		A	SSU rRNA	C	569	G	575	*	C	880	G	881	cWW	cWW
156	IL_2AW7_029	2AW7	0.4205	5		A	16S ribosomal RNA	C	569	G	575	*	C	880	G	881	cWW	cWW
157	IL_4A1B_088	4A1B	0.3954	1		1	26S RRNA	C	2199	G	2201	*	C	2232	G	2233	cWW	cWW
158	IL_2QBG_035	2QBG	0.3737	1		B	23S rRNA	C	994	A	996	*	U	1159	G	1160	cWW	cWW
159	IL_4QCN_034	4QCN	0.3841	1		A	23S Ribosomal RNA	C	1040	A	1042	*	U	1205	G	1206	cWW	cWW
160	IL_1U9S_003	1U9S	0.3981	2	Major groove intercalation	A	RIBONUCLEASE P	C	224	A	227	*	U	116	G	117	cWW	cWW
161	IL_4IOA_031	4IOA	0.3463	1	Single bulged C	X	LSU rRNA	U	1005	A	1007	*	U	1170	A	1171	cWW	cWW
162	IL_3J7A_041	3J7A	0.3054	1		A	SSU rRNA	C	1027	U	1029	*	A	936	G	937	cWW	cWW
163	IL_4KZD_001	4KZD	0.3461	1	Single bulged U	R	RNA (84-MER)	C	74	G	76	*	C	10	G	11	cWW	cWW
164	IL_1S72_064	1S72	0.3267	1	Single bulged A (H)	0	LSU rRNA	C	2021	G	2023	*	C	1826	G	1827	cWW	cWW
165	IL_3B31_001	3B31	0.3396	1		A	RNA (29-MER)	C	6181	G	6183	*	C	6194	G	6195	cWW	cWW
166	IL_2QUX_002	2QUX	0.3634	1	Single bulged A	F	RNA (25-MER)	C	5	G	7	*	C	20	G	21	cWW	cWW
167	IL_4A1B_050	4A1B	0.3802	1		1	26S RRNA	G	1094	G	1096	*	U	1117	C	1118	cWW	cWW
168	IL_2AW7_026	2AW7	0.3105	1		A	16S ribosomal RNA	A	460	G	462	*	C	470	U	471	cWW	cWW
169	IL_4L8H_001	4L8H	0.2860	1	Single bulged A	R	RNA operator hairpin	C	4	U	6	*	A	16	G	17	cWW	cWW
170	IL_1JZV_002	1JZV	0.2734	1	Single bulged A	B+A	RNA (9-mer)	U	12	C	14	*	G	4	A	5	cWW	cWW
171	IL_1JZV_005	1JZV	0.2807	1		D+C	RNA (9-mer)	U	32	C	34	*	G	24	A	25	cWW	cWW
172	IL_4CUV_093	4CUV	0.4562	2		1	25S RRNA	U	2241	A	2244	*	U	2200	G	2201	cWW	cWW
173	IL_4W21_119	4W21	0.4878	2		5	28S ribosomal RNA	U	3745	A	3748	*	U	3704	G	3705	cWW	cWW
174	IL_3U5H_092	3U5H	0.5294	2		5	25S rRNA	U	2241	A	2244	*	U	2200	G	2201	cWW	cWW
175	IL_1VW3_055	1VW3	0.4436	2		A	21S ribosomal RNA	U	1799	A	1802	*	U	1749	G	1750	cWW	cWW
176	IL_2QBG_073	2QBG	0.5296	2		B	23S rRNA	U	1898	A	1901	*	U	1841	G	1842	cWW	cWW
177	IL_1VX6_093	1VX6	0.4729	2		A	28S ribosomal RNA	U	2534	A	2537	*	U	2493	G	2494	cWW	cWW
178	IL_4QCN_068	4QCN	0.5250	2		A	23S Ribosomal RNA	U	1920	A	1923	*	U	1872	G	1873	cWW	cWW
179	IL_1S72_067	1S72	0.5362	2	Major groove intercalation (H)	0	LSU rRNA	U	1939	A	1942	*	U	1897	G	1898	cWW	cWW
180	IL_3U5H_065	3U5H	0.5314	1		5	25S rRNA	U	1398	G	1400	*	C	1411	G	1412	cWW	cWW
181	IL_4A1B_023	4A1B	0.4898	1		1	26S RRNA	U	484	C	486	*	G	493	G	494	cWW	cWW
182	IL_1FJG_016	1FJG	0.3878	1		A	SSU rRNA	U	387	A	389	*	U	375	G	376	cWW	cWW
183	IL_2AW7_019	2AW7	0.4382	1		A	16S ribosomal RNA	U	387	A	389	*	U	375	G	376	cWW	cWW
184	IL_2QBG_089	2QBG	0.4695	1		B	23S rRNA	U	2401	C	2403	*	G	2414	G	2415	cWW	cWW
185	IL_1FUF_002	1FUF	0.4803	2	Multiple bulged bases	A+B	RNA (14-mer)	U	5	C	8	*	G	23	G	24	cWW	cWW
186	IL_1FUF_003	1FUF	0.4913	2	Multiple bulged bases	B+A	RNA (14-mer)	U	19	C	22	*	G	9	G	10	cWW	cWW
187	IL_3UCZ_003	3UCZ	0.4459	2		R	RNA (92-MER)	U	81	C	84	*	G	56	G	57	cWW	cWW
188	IL_3IWN_004	3IWN	0.4585	2	Multiple bulged bases	A	C-di-GMP riboswitch	U	76	C	79	*	G	46	G	47	cWW	cWW
189	IL_1S72_010	1S72	0.4627	1	Single bulged G (H)	0	LSU rRNA	U	374	C	376	*	G	274	G	275	cWW	cWW
190	IL_3DIR_005	3DIR	0.4848	1		A	RNA (174-MER)	U	109	C	111	*	G	84	G	85	cWW	cWW
191	IL_3J7A_009	3J7A	0.4669	2	Multiple bulged bases (H)	A	SSU rRNA	U	115	U	118	*	A	306	G	307	cWW	cWW
192	IL_4BPP_009	4BPP	0.4010	2		A	18S RRNA	U	109	U	112	*	A	291	G	292	cWW	cWW
193	IL_4A1B_006	4A1B	0.4102	1		1	26S RRNA	U	260	C	262	*	G	158	G	159	cWW	cWW
194	IL_1FJG_007	1FJG	0.4233	2	Multiple bulged bases (H)	A	SSU rRNA	U	129	C	131	*	G	231	G	232	cWW	cWW
195	IL_4W21_102	4W21	0.3036	1		5	28S ribosomal RNA	C	2651	C	2653	*	G	2681	G	2682	cWW	cWW
196	IL_4R0D_005	4R0D	0.3010	1		A	Group II catalytic intron	U	121	C	123	*	G	148	G	149	ncWW
197	IL_4W21_078	4W21	0.2928	1		5	28S ribosomal RNA	U	1918	C	1920	*	G	2063	G	2064	cWW	cWW
198	IL_1VW3_028	1VW3	0.2859	1		A	21S ribosomal RNA	U	797	U	799	*	A	828	A	829	cWW	cWW
199	IL_1VX6_026	1VX6	0.2128	1		A	28S ribosomal RNA	U	584	U	586	*	A	605	A	606	cWW	cWW
200	IL_4A1B_131	4A1B	0.1981	1		1	26S RRNA	A	3297	G	3299	*	C	3320	U	3321	cWW	cWW
201	IL_4CUV_108	4CUV	0.2737	1		1	25S RRNA	C	2625	C	2627	*	G	2614	G	2615	cWW	cWW
202	IL_4C7O_004	4C7O	0.2644	1	Single bulged G	E	SRP RNA	U	27	U	29	*	A	15	A	16	cWW	cWW
203	IL_2AW7_002	2AW7	0.2911	1		A	16S ribosomal RNA	C	396	U	398	*	A	44	G	45	cWW	cWW
204	IL_1F7Y_002	1F7Y	0.2893	1		B	16S RIBOSOMAL RNA FRAGMENT	C	46	C	48	*	G	21	G	22	cWW	cWW
205	IL_4CUX_066	4CUX	0.2848	1		2	18S RRNA	C	1426	G	1428	*	C	1280	G	1281	cWW	cWW
206	IL_1VX6_135	1VX6	0.2357	1		A	28S ribosomal RNA	U	3773	G	3775	*	C	3716	A	3717	cWW	cWW
207	IL_4A1B_116	4A1B	0.2530	1		1	26S RRNA	C	2958	G	2960	*	C	2948	G	2949	cWW	cWW
208	IL_3U5H_119	3U5H	0.2811	1		5	25S rRNA	C	2970	G	2972	*	C	2960	G	2961	cWW	cWW
209	IL_1S72_088	1S72	0.2512	1		0	LSU rRNA	C	2636	G	2638	*	C	2626	G	2627	cWW	cWW
210	IL_3MEI_001	3MEI	0.2717	1	Single bulged U	B+A	RNA (23-mer)	C	15	G	17	*	C	7	G	8	cWW	cWW
211	IL_1VX6_119	1VX6	0.2841	1		A	28S ribosomal RNA	C	3329	G	3331	*	C	3319	G	3320	cWW	cWW
212	IL_1VW3_082	1VW3	0.2651	1		A	21S ribosomal RNA	C	2868	G	2870	*	C	2858	G	2859	cWW	cWW
213	IL_2QBG_099	2QBG	0.2576	1		B	23S rRNA	C	2601	G	2603	*	C	2591	G	2592	cWW	cWW
214	IL_4CUV_123	4CUV	0.2444	1		1	25S RRNA	C	2970	G	2972	*	C	2960	G	2961	cWW	cWW
215	IL_4QCN_098	4QCN	0.2451	1		A	23S Ribosomal RNA	C	2613	G	2615	*	C	2603	G	2604	cWW	cWW
216	IL_1VW3_004	1VW3	0.1800	1		A	21S ribosomal RNA	A	378	G	380	*	C	96	U	97	cWW	cWW
217	IL_3U5H_002	3U5H	0.1950	1		8+5	5.8S rRNA	G	150	G	152	*	C	7	C	8	cWW	cWW
218	IL_4W21_001	4W21	0.2571	1		8+5	5.8S ribosomal RNA	G	149	G	151	*	C	6	C	7	cWW	cWW
219	IL_4W23_058	4W23	0.2226	1		2	18S ribosomal RNA	G	1325	G	1327	*	C	1502	C	1503	cWW	cWW
220	IL_4W21_099	4W21	0.2831	1		5	28S ribosomal RNA	G	2724	G	2726	*	C	2613	C	2614	cWW	cWW
221	IL_1VX6_036	1VX6	0.2645	1		A	28S ribosomal RNA	C	1014	A	1016	*	U	947	G	948	cWW	cWW
222	IL_3U5H_143	3U5H	0.1544	1		7	5S rRNA	A	63	G	65	*	C	15	U	16	cWW	cWW
223	IL_1VX6_140	1VX6	0.1883	1		B	5S ribosomal RNA	U	62	A	64	*	U	15	A	16	cWW	cWW
224	IL_2PLY_002	2PLY	0.2101	1		E	RNA (23-mer)	C	25	G	27	*	C	21	G	22	cWW	cWW
225	IL_1VX6_138	1VX6	0.1351	1		A	28S ribosomal RNA	A	3731	G	3733	*	C	3756	U	3757	cWW	cWW
226	IL_1R3E_001	1R3E	0.2008	3	Multiple bulged bases	D+E	RNA (17-mer)	G	408	G	412	*	C	415	C	416	cWW	cWW
227	IL_4FRG_002	4FRG	0.2334	1	Single bulged U	B	cobalamin riboswitch aptamer domain	G	23	G	25	*	C	39	C	40	cWW	cWW
228	IL_2C4Z_001	2C4Z	0.2458	1		R	RNA (19-mer)	G	5\|\|\|\|P_1	G	7\|\|\|\|P_1	*	C	14\|\|\|\|P_1	C	15\|\|\|\|P_1	cWW	cWW
229	IL_2BQ5_001	2BQ5	0.2215	1		R	RNA (19-mer)	G	5\|\|\|\|P_1	G	7\|\|\|\|P_1	*	C	14\|\|\|\|P_1	C	15\|\|\|\|P_1	cWW	cWW
230	IL_4W21_030	4W21	0.2340	1		5	28S ribosomal RNA	G	508	U	510	*	A	649	C	650	cWW	cWW
231	IL_2C50_001	2C50	0.1638	1		R	RNA (19-mer)	G	5\|\|\|\|P_1	G	7\|\|\|\|P_1	*	C	14\|\|\|\|P_1	C	15\|\|\|\|P_1	cWW	cWW
232	IL_2IZM_001	2IZM	0.1769	1		R	RNA (19-mer)	G	5\|\|\|\|P_1	G	7\|\|\|\|P_1	*	C	14\|\|\|\|P_1	C	15\|\|\|\|P_1	cWW	cWW
233	IL_2BU1_001	2BU1	0.1646	1		R	RNA (19-mer)	G	5\|\|\|\|P_1	G	7\|\|\|\|P_1	*	C	14\|\|\|\|P_1	C	15\|\|\|\|P_1	cWW	cWW
234	IL_1VX6_129	1VX6	0.1621	1		A	28S ribosomal RNA	G	3580	G	3582	*	C	3620	C	3621	cWW	cWW
235	IL_3U5F_001	3U5F	0.2258	1		6	18S rRNA	U	24	A	26	*	U	600	A	601	cWW	cWW
236	IL_3J7A_001	3J7A	0.1845	1	Single bulged C (H)	A	SSU rRNA	U	24	A	26	*	U	607	A	608	cWW	cWW
237	IL_2IZN_001	2IZN	0.2084	1	Single bulged G	R	RNA (19-mer)	C	5\|\|\|\|P_1	C	7\|\|\|\|P_1	*	G	14\|\|\|\|P_1	G	15\|\|\|\|P_1	cWW	cWW
238	IL_4CUV_029	4CUV	0.2156	1		1	25S RRNA	G	779	G	781	*	C	752	C	753	cWW	cWW
239	IL_3WBM_001	3WBM	0.1608	1	Single bulged U	X+Y	RNA (25-MER)	G	2	A	4	*	U	23	C	24	cWW	cWW
240	IL_3J7A_027	3J7A	0.1425	5		A	SSU rRNA	G	623	A	629	*	U	1205	C	1206	cWW	cWW
241	IL_4W21_166	4W21	0.2296	1		5	28S ribosomal RNA	G	5012	A	5014	*	U	5035	C	5036	ncWW	cWW
242	IL_4W23_031	4W23	0.1789	5		2	18S ribosomal RNA	G	665	A	671	*	U	1161	C	1162	cWW	cWW
243	IL_3U5F_066	3U5F	0.1652	1		6	18S rRNA	G	1268	G	1270	*	C	1440	C	1441	cWW	cWW
244	IL_4B5R_001	4B5R	0.1987	1	Single bulged A (H)	A	SAM-I riboswitch	G	13	G	15	*	C	40	C	41	cWW	cWW
245	IL_3GX5_001	3GX5	0.1768	1		A	RNA (94-MER)	G	13	G	15	*	C	40	C	41	cWW	cWW
246	IL_4BPP_022	4BPP	0.2017	1		A	18S RRNA	U	431	G	433	*	C	455	A	456	cWW	cWW
247	IL_3U5F_024	3U5F	0.1843	1		6	18S rRNA	U	439	A	441	*	U	463	A	464	cWW	cWW
248	IL_4BPP_013	4BPP	0.1230	1		A	18S RRNA	G	181	G	183	*	C	192	C	193	cWW	cWW
249	IL_1FJG_040	1FJG	0.1526	1	Single bulged U (H)	A	SSU rRNA	G	1048	G	1050	*	C	1208	C	1209	cWW	cWW
250	IL_2AW7_001	2AW7	0.1515	1		A	16S ribosomal RNA	U	30	A	32	*	U	552	A	553	cWW	cWW
251	IL_1DQH_001	1DQH	0.1557	1	Single bulged C	B+A	RNA (10-mer)	U	15	G	17	*	C	3	A	4	cWW	cWW
252	IL_1S03_006	1S03	0.1311	1	Single bulged C	B	47-MER	G	9	G	11	*	C	39	C	40	cWW	cWW
253	IL_1S72_104	1S72	0.1675	1	Single bulged U (H)	9	5S rRNA	G	86	G	88	*	C	95	C	96	cWW	cWW
254	IL_4BPP_075	4BPP	0.1636	1		A	18S RRNA	G	1364	G	1366	*	C	1374	C	1375	cWW	cWW
255	IL_4W21_023	4W21	0.1744	1		5	28S ribosomal RNA	G	695	G	697	*	C	459	C	460	cWW	cWW
256	IL_4W21_168	4W21	0.2014	1		7	5S ribosomal RNA	U	62	G	64	*	C	15	A	16	ncWW	cWW
257	IL_1I9X_002	1I9X	0.1508	1	Single bulged A	B+A	RNA (13-mer)	U	4	A	6	*	U	9	A	10	cWW	cWW
258	IL_4W23_022	4W23	0.1734	1		2	18S ribosomal RNA	U	487	A	489	*	U	511	A	512	cWW	cWW
259	IL_3J7A_021	3J7A	0.1708	1	Single bulged U (H)	A	SSU rRNA	U	445	A	447	*	U	469	A	470	cWW	cWW
260	IL_1FJG_001	1FJG	0.1802	1	Single bulged G (H)	A	SSU rRNA	U	30	A	32	*	U	552	A	553	cWW	cWW
261	IL_3U5F_033	3U5F	0.2047	5		6	18S rRNA	G	616	A	622	*	U	1104	C	1105	cWW	cWW
262	IL_4BPP_033	4BPP	0.2557	5		A	18S RRNA	G	610	A	616	*	U	1076	C	1077	cWW	cWW
263	IL_2IZ9_001	2IZ9	0.2474	1		R	RNA (18-mer)	G	5\|\|\|\|P_1	G	7\|\|\|\|P_1	*	C	14\|\|\|\|P_1	C	15\|\|\|\|P_1	cWW	cWW
264	IL_3U5F_056	3U5F	0.2563	1		6	18S rRNA	G	1051	G	1053	*	C	1066	C	1067	cWW	cWW
265	IL_3U5H_140	3U5H	0.2088	1		5	25S rRNA	G	3340	A	3342	*	U	3363	C	3364	cWW	cWW
266	IL_2AW7_017	2AW7	0.2836	1		A	16S ribosomal RNA	U	367	G	369	*	C	392	A	393	cWW	cWW
267	IL_4CUV_146	4CUV	0.2213	1		1	25S RRNA	G	3340	A	3342	*	U	3363	C	3364	cWW	cWW
268	IL_3SN2_001	3SN2	0.2052	1	Single bulged C	B	transferrin receptor iron regulatory element B RNA	U	7	G	9	*	C	24	A	25	cWW	cWW
269	IL_3J7A_059	3J7A	0.2472	1	Single bulged A (H)	A	SSU rRNA	C	1672	G	1674	*	C	1381	G	1382	cWW	cWW
270	IL_1I9X_001	1I9X	0.2303	1	Single bulged A	A+B	RNA (13-mer)	U	4	A	6	*	U	9	A	10	cWW	cWW
271	IL_4AOB_001	4AOB	0.2432	1	Single bulged A	A	SAM-I riboswitch	G	13	G	15	*	C	40	C	41	cWW	cWW
272	IL_2ZY6_002	2ZY6	0.2318	1	Single bulged U	A	phenylalanyl transfer RNA	G	10	G	12	*	C	24	C	25	cWW	cWW
273	IL_4A1B_059	4A1B	0.2532	1		1	26S RRNA	G	1234	G	1236	*	C	1323	C	1324	cWW	cWW
274	IL_3U5H_058	3U5H	0.2365	1		5	25S rRNA	G	1207	G	1209	*	C	1296	C	1297	cWW	cWW
275	IL_3W3S_002	3W3S	0.1468	1	Single bulged U	B	Selenocysteine transfer RNA	G	43	G	44	*	C	26	C	27	cWW	cWW
276	IL_4CUV_076	4CUV	0.1216	1		1	25S RRNA	G	1778	G	1780	*	C	1669	C	1670	cWW	cWW
277	IL_2AW7_048	2AW7	0.1425	1		A	16S ribosomal RNA	G	1048	G	1050	*	C	1208	C	1209	cWW	cWW
278	IL_4BPP_064	4BPP	0.1741	1		A	18S RRNA	G	1240	G	1242	*	C	1411	C	1412	cWW	cWW
279	IL_1VX6_061	1VX6	0.1776	1		A	28S ribosomal RNA	G	1335	G	1337	*	C	1424	C	1425	cWW	cWW
280	IL_3DHS_003	3DHS	0.1833	1		A	RNase P RNA	G	66	G	68	*	C	77	C	78	cWW	cWW
281	IL_2A64_003	2A64	0.1436	1	Single bulged U	A	ribonuclease P RNA	G	66	G	68	*	C	77	C	78	cWW	cWW
282	IL_4CUX_030	4CUX	0.2221	6		2	18S RRNA	A	550	G	557	*	C	587	U	588	cWW	cWW
283	IL_4CUV_059	4CUV	0.2045	1		1	25S RRNA	G	1207	G	1209	*	C	1296	C	1297	cWW	cWW
284	IL_4CUV_002	4CUV	0.2206	1		4+1	5.8S RRNA	G	150	G	152	*	C	7	C	8	cWW	cWW
285	IL_4CUX_001	4CUX	0.2095	1		2	18S RRNA	U	24	A	26	*	U	600	A	601	cWW	cWW
286	IL_4W21_115	4W21	0.1881	1		5	28S ribosomal RNA	G	3827	G	3829	*	C	3632	C	3633	cWW	cWW
287	IL_1VW3_067	1VW3	0.1550	2		A	21S ribosomal RNA	A	1988	G	1991	*	C	2256	U	2257	cWW	cWW
288	IL_1U63_002	1U63	0.1724	1		B	49 NT FRAGMENT OF MRNA FOR L1	G	28	A	30	*	U	16	C	17	cWW	cWW
289	IL_4BPP_053	4BPP	0.1344	1		A	18S RRNA	G	1091	A	1093	*	U	1100	C	1101	cWW	cWW
290	IL_3U5H_077	3U5H	0.1215	1		5	25S rRNA	G	1778	G	1780	*	C	1669	C	1670	cWW	cWW
291	IL_1VX6_090	1VX6	0.1268	1		A	28S ribosomal RNA	G	2616	G	2618	*	C	2421	C	2422	cWW	cWW
292	IL_4A1B_084	4A1B	0.1770	1		1	26S RRNA	G	2318	G	2320	*	C	2124	C	2125	cWW	cWW
293	IL_1VX6_066	1VX6	0.1273	1		A	28S ribosomal RNA	A	1548	A	1550	*	U	1557	U	1558	cWW	cWW
294	IL_3J7A_056	3J7A	0.0000	1	Single bulged U (H)	A	SSU rRNA	G	1369	G	1371	*	C	1686	C	1687	cWW	cWW
295	IL_3D2V_001	3D2V	0.0912	1	Single bulged U	A	TPP riboswitch (THI element)	G	73	G	75	*	C	5	C	6	cWW	cWW
296	IL_1R3E_002	1R3E	0.1154	3	Multiple bulged bases	E+D	RNA (17-mer)	G	408	G	412	*	C	415	C	416	cWW	cWW
297	IL_4BPP_031	4BPP	0.1543	1		A	18S RRNA	C	552	U	554	*	A	579	G	580	cWW	cWW
298	IL_1FJG_014	1FJG	0.1965	1	Single bulged U (H)	A	SSU rRNA	U	367	C	369	*	G	392	A	393	cWW	cWW
299	IL_2QBG_007	2QBG	0.1436	1		B	23S rRNA	G	442	C	444	*	G	36	C	37	cWW	cWW
300	IL_1GID_002	1GID	0.1641	1		A	P4-P6 RNA RIBOZYME DOMAIN	C	209	C	211	*	G	110	G	111	cWW	cWW
301	IL_1GID_009	1GID	0.1870	1	Single bulged A	B	P4-P6 RNA RIBOZYME DOMAIN	C	209	C	211	*	G	110	G	111	cWW	cWW
302	IL_1VX6_105	1VX6	0.1919	1		A	28S ribosomal RNA	U	2964	C	2966	*	G	2953	A	2954	cWW	cWW
303	IL_3U5H_103	3U5H	0.2024	1		5	25S rRNA	C	2625	C	2627	*	G	2614	G	2615	cWW	cWW
304	IL_1S72_077	1S72	0.1912	1	Single bulged A (H)	0	LSU rRNA	U	2290	C	2292	*	G	2279	A	2280	cWW	cWW
305	IL_2VPL_002	2VPL	0.1281	1	Single bulged A	B	FRAGMENT OF MRNA FOR L1-OPERON CONTAINING REGULATOR L1-BINDING SITE	G	28	A	30	*	U	16	C	17	cWW	cWW
306	IL_3U5H_131	3U5H	0.2090	1		5	25S rRNA	G	3197	G	3199	*	C	3193	C	3194	cWW	cWW
307	IL_2AW7_043	2AW7	0.2361	1		A	16S ribosomal RNA	G	925	G	927	*	U	1390	U	1391	cWW	cWW
308	IL_1FJG_036	1FJG	0.2331	1	Single bulged G (H)	A	SSU rRNA	G	925	G	927	*	U	1390	U	1391	cWW	cWW
309	IL_1VX6_014	1VX6	0.2620	1		A	28S ribosomal RNA	G	197	G	199	*	U	212	C	213	cWW	cWW
310	IL_2PN4_003	2PN4	0.2379	1		B+A	RNA (20-mer)	G	105	G	107	*	U	61	C	62	cWW	cWW
311	IL_4A1B_056	4A1B	0.2016	1		1	26S RRNA	A	1207	G	1209	*	U	1351	U	1352	cWW	cWW
312	IL_4ANG_001	4ANG	0.2768	1		R	RNA (20-mer)	A	5\|\|A\|\|P_1	G	7\|\|A\|\|P_1	*	C	15\|\|A\|\|P_1	U	16\|\|A\|\|P_1	cWW	cWW
313	IL_3TZR_002	3TZR	0.2431	1	Single bulged U	B+A	RNA (16-mer)	G	105	G	107	*	U	61	C	62	cWW	cWW
314	IL_4W21_028	4W21	0.2989	1		5	28S ribosomal RNA	G	497	G	499	*	C	655	C	656	cWW	cWW
315	IL_3U5F_069	3U5F	0.3278	1		6	18S rRNA	C	1426	G	1428	*	C	1280	G	1281	cWW	cWW
316	IL_4W23_061	4W23	0.3333	1		2	18S ribosomal RNA	C	1488	G	1490	*	C	1337	G	1338	cWW	cWW
317	IL_4W21_044	4W21	0.2947	1		5	28S ribosomal RNA	U	1209	G	1211	*	C	1086	A	1087	cWW	cWW
318	IL_4BPP_067	4BPP	0.4248	1		A	18S RRNA	C	1397	G	1399	*	C	1252	G	1253	cWW	cWW
319	IL_4CUV_023	4CUV	0.4033	1		1	25S RRNA	C	577	G	579	*	U	512	G	513	cWW	ncWW
320	IL_4CUV_094	4CUV	0.3555	1		1	25S RRNA	C	2204	G	2206	*	C	2237	G	2238	cWW
321	IL_4QJH_005	4QJH	0.3655	1		D+C	Twister Ribozyme	U	57	G	59	*	C	14	A	15	cWW	ncWW
322	IL_1MFQ_005	1MFQ	0.4612	1	Single bulged A	A	SRP RNA	G	175	G	177	*	C	220	C	221	cWW	cWW
323	IL_4BPP_021	4BPP	0.4782	1		A	18S RRNA	U	412	G	414	*	C	402	A	403	cWW	cWW
324	IL_4CUV_065	4CUV	0.5305	1		1	25S RRNA	C	1385	G	1387	*	C	1420	G	1421	cWW	cWW
325	IL_1X8W_001	1X8W	0.5500	1		A	Tetrahymena ribozyme RNA	C	209	C	211	*	G	110	G	111	cWW	cWW
326	IL_4W21_086	4W21	0.5420	1		5	28S ribosomal RNA	C	2083	G	2085	*	C	2272	G	2273		cWW
327	IL_4A1B_123	4A1B	0.4943	1		1	26S RRNA	G	3144	G	3146	*	U	3247	C	3248	cWW	cWW
328	IL_4R0D_019	4R0D	0.5096	2		A	Group II catalytic intron	C	572	G	575	*	U	558	G	559	cWW	cWW
329	IL_2NOK_003	2NOK	0.3736	1		B+A	RNA (20-mer)	G	105	G	107	*	U	61	C	62	cWW	cWW
330	IL_2NOK_006	2NOK	0.4754	1		D+C	RNA (20-mer)	G	105	G	107	*	U	61	C	62	cWW	cWW
331	IL_4A1B_121	4A1B	0.5414	2		1	26S RRNA	A	3066	G	3069	*	U	3052	U	3053	cWW	cWW
332	IL_1VX6_126	1VX6	0.4883	2		A	28S ribosomal RNA	A	3462	G	3465	*	U	3448	U	3449	cWW	cWW
333	IL_2QBG_104	2QBG	0.5078	2		B	23S rRNA	A	2711	G	2714	*	U	2695	U	2696	cWW	cWW
334	IL_1VW3_087	1VW3	0.4914	2		A	21S ribosomal RNA	A	3047	G	3050	*	U	2962	U	2963	cWW	cWW
335	IL_4CUX_053	4CUX	0.3690	1		2	18S RRNA	G	1051	G	1053	*	C	1066	C	1067	ncWW	cWW
336	IL_4W21_060	4W21	0.3757	1		5	28S ribosomal RNA	C	1590	G	1592	*	C	1603	G	1604	cWW	cWW
337	IL_2AW7_051	2AW7	0.4173	1		A	16S ribosomal RNA	C	1195	A	1197	*	U	1060	G	1061	cWW	cWW
338	IL_4LGT_002	4LGT	0.3662	1	Single bulged A	E	stem-loop of 23S rRNA	C	2601	G	2603	*	C	2591	G	2592	cWW	cWW
339	IL_3U5H_034	3U5H	0.3797	1		5	25S rRNA	C	873	G	875	*	C	886	G	887	cWW	cWW
340	IL_4A1B_039	4A1B	0.4061	1		1	26S RRNA	C	898	G	900	*	C	911	G	912	cWW	cWW
341	IL_1FJG_043	1FJG	0.4027	1		A	SSU rRNA	C	1195	G	1197	*	C	1060	G	1061	cWW	cWW
342	IL_4A1B_076	4A1B	0.3085	1		1	26S RRNA	U	1758	G	1760	*	C	1733	A	1734	ncWW	cWW
343	IL_1VX6_040	1VX6	0.3192	1		A	28S ribosomal RNA	C	992	G	994	*	C	1005	G	1006	cWW	cWW
344	IL_4CUV_037	4CUV	0.3135	1		1	25S RRNA	C	873	G	875	*	C	886	G	887	cWW	cWW
345	IL_1VW3_019	1VW3	0.2754	1		A	21S ribosomal RNA	C	619	A	621	*	U	611	G	612	cWW	cWW
346	IL_4A1C_003	4A1C	0.2932	1		3	5S RRNA	U	62	A	64	*	U	15	A	16	cWW	cWW
347	IL_6MSF_001	6MSF	0.3035	1	Single bulged A	R	RNA (14-mer)	C	2\|\|\|\|P_1	C	4\|\|\|\|P_1	*	G	12\|\|\|\|P_1	G	13\|\|\|\|P_1	cWW	cWW
348	IL_1S72_074	1S72	0.2956	1	Single bulged U (H)	0	LSU rRNA	A	2108	G	2110	*	C	2477	U	2478	cWW	cWW
349	IL_4A1B_010	4A1B	0.3028	2		1	26S RRNA	A	240	G	243	*	C	177	U	178	cWW	cWW
350	IL_3DIR_001	3DIR	0.3860	1		A	RNA (174-MER)	G	12	G	14	*	C	78	C	79	cWW	cWW
351	IL_3D0U_001	3D0U	0.3356	1	Single bulged C	A	Lysine Riboswitch RNA	G	9	G	11	*	C	75	C	76	cWW	cWW
352	IL_1S72_040	1S72	0.3045	1		0	LSU rRNA	G	1108	G	1110	*	C	1253	C	1254	cWW	cWW
353	IL_4IOA_075	4IOA	0.2803	1	Single bulged U	X	LSU rRNA	G	2050	G	2052	*	C	2421	C	2422	cWW	cWW
354	IL_2QBG_080	2QBG	0.2832	1		B	23S rRNA	G	2067	G	2069	*	C	2442	C	2443	cWW	cWW
355	IL_4QCN_076	4QCN	0.2405	1		A	23S Ribosomal RNA	G	2089	G	2091	*	C	2454	C	2455	cWW	cWW
356	IL_1VW3_064	1VW3	0.2751	1		A	21S ribosomal RNA	A	1967	G	1969	*	C	2708	U	2709	cWW	cWW
357	IL_1S03_005	1S03	0.2990	1	Single bulged U	B	47-MER	A	6	G	8	*	C	41	U	42	cWW	cWW
358	IL_1VX6_032	1VX6	0.2863	1		A	28S ribosomal RNA	G	898	G	900	*	C	875	C	876	cWW	cWW
359	IL_3U5H_025	3U5H	0.2911	1		5	25S rRNA	G	779	G	781	*	C	752	C	753	cWW	cWW
360	IL_4A1B_031	4A1B	0.2726	1		1	26S RRNA	G	804	G	806	*	C	776	C	777	cWW	cWW
361	IL_4W21_052	4W21	0.2656	1		5	28S ribosomal RNA	G	1496	G	1498	*	C	1467	C	1468	cWW	cWW
362	IL_4W21_089	4W21	0.3619	1		5	28S ribosomal RNA	G	2299	G	2301	*	C	2334	C	2335	ncWW	ncWW
363	IL_4W21_161	4W21	0.5062	1		5	28S ribosomal RNA	G	4899	G	4901	*	C	4920	C	4921	cWW	cWW
364	IL_3U5H_125	3U5H	0.4453	2		5	25S rRNA	A	3077	G	3080	*	C	3063	U	3064	cWW	cWW
365	IL_4CUV_130	4CUV	0.4445	2		1	25S RRNA	A	3077	G	3080	*	C	3063	U	3064	cWW	cWW
366	IL_1VX6_116	1VX6	0.5506	2		A	28S ribosomal RNA	A	3299	G	3302	*	C	3240	U	3241	cWW	cWW
367	IL_1S72_086	1S72	0.5550	2		0	LSU rRNA	G	2606	G	2609	*	C	2547	C	2548	cWW	cWW
368	IL_4W21_143	4W21	0.6081	2		5	28S ribosomal RNA	A	4517	G	4520	*	C	4458	U	4459	cWW	cWW
369	IL_3U5H_115	3U5H	0.5708	2		5	25S rRNA	A	2940	G	2943	*	C	2881	U	2882	cWW	cWW
370	IL_4A1B_113	4A1B	0.6149	2		1	26S RRNA	A	2928	G	2931	*	C	2869	U	2870	cWW	cWW
371	IL_4CUV_119	4CUV	0.6012	2		1	25S RRNA	A	2940	G	2943	*	C	2881	U	2882	cWW	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
GUG*CC	32
GAG*CC	23
CAG*CG	18
GCG*CC	14
GUU*AC	14
GAC*GC	13
GUC*GC	12
UAC*GA	12
CUG*CG	12
GUA*UC	8
GAU*AC	8
UAAA*UG	8
AAU*AU	7
GGA*UU	7
AUG*CU	6
GAA*UC	6
CAC*GG	6
UCG*CA	6
GUG*UC	6
AAG*CU	5
UAA*UA	5
AUC*GU	5
AACG*CU	5
AGU*AU	4
AUA*UU	4
GCU*AC	4
GAC*GU	4
CAU*AG	4
UGC*GG	4
UCA*UA	4
GUUAAAA*UC	4
GGU*GC	3
GGA*UC	3
CGC*GG	3
UUA*UA	3
GUUG*CC	2
GGC*GU	2
GAG*CU	2
AAA*UU	2
UAU*AA	2
AUU*AU	2
AAUC*GU	2
GCC*GC	2
GAU*GC	2
AAC*GU	2
GCG*UC	2
UGU*AA	2
CUC*GG	2
CUU*AG	2
CGUAAAG*CG	2
CCA*UG	2
UAC*GG	2
UGA*UG	2
UUC*GG	2
UUUC*GG	2
UAGC*GG	2
UAGU*AG	2
UAG*CA	2
CAA*UG	2
GUUCG*CC	2
UUG*CA	2
UGA*UA	2
GGG*UU	2
AUUG*CU	2
GGC*GC	1
CGCCCGAU*GG	1
GAU*AU	1
AAU*GU	1
GCUC*GC	1
UCGU*AA	1
UUU*AA	1
UUAC*GA	1
CAAC*GG	1
CAAA*UG	1
UGAA*UG	1
UCAA*UG	1
UAG*CG	1
UGAC*GG	1
UCU*AA	1
CCC*GG	1
GCA*UC	1
AGGGCAAG*CU	1
AUAG*CU	1
UUC*GA	1
AUG*UU	1
CAG*UG	1
CCG*CG	1
CAAG*UG	1
AAUG*UU	1
AGUG*UU	1
ACUG*UU	1
AUAG*UU	1
CGA*UG	1
AAGG*CU	1
GUCG*CC	1

Non-Watson-Crick part of the motif

Sequence	Counts
A*	131
U*	115
C*	38
G*	36
AA*	11
UU*	6
AG*	5
AC*	5
UUAAA*	4
AU*	3
UA*	3
CU*	2
GUAAA*	2
GA*	2
UUC*	2
GCCCGA*	1
CG*	1
CA*	1
GGGCAA*	1
GU*	1
UC*	1

Release history

Release	1.18
Date	2014-10-07
Status	Updated, 2 parents

Parent motifs

Parent motif	Common motif instances	Only in IL_48256.2	Only in the parent motif
IL_48256.1 Compare	IL_4CUX_001, IL_4CUV_149, IL_1NBS_009, IL_3U5F_058, IL_1VX6_135, IL_4CUV_023, IL_1FUF_003, IL_4BPP_021, IL_4BPP_022, IL_1VX6_138, IL_4BPP_024, IL_4CUV_146, IL_1U9S_003, IL_4A1B_113, IL_4A1B_059, IL_3U5H_105, IL_4A1B_116, IL_3U5H_103, IL_3U5H_136, IL_4A1B_051, IL_4A1B_050, IL_4A1B_056, IL_2C50_001, IL_3U5H_065, IL_1VW3_064, IL_1VW3_067, IL_1S72_104, IL_3D2V_001, IL_2BQ5_001, IL_1S72_040, IL_4QCN_002, IL_4CUX_063, IL_1VW3_069, IL_3GX5_001, IL_3U5H_077, IL_3TZR_002, IL_3W3S_001, IL_1VX6_140, IL_4CUV_142, IL_4CUV_136, IL_4A1B_088, IL_4CUV_134, IL_4IOA_002, IL_4CUV_130, IL_4CUV_158, IL_2PN4_003, IL_1VX6_126, IL_1CSL_002, IL_2QBG_099, IL_1FJG_022, IL_4BPP_016, IL_4FAW_004, IL_4BPP_013, IL_4CUV_029, IL_2AW7_029, IL_1GID_009, IL_3U5F_059, IL_3U5F_056, IL_3U5F_016, IL_1GID_005, IL_2AW7_051, IL_4A1B_044, IL_1GID_002, IL_4QCN_020, IL_4IOA_075, IL_4CUX_017, IL_4QCN_076, IL_3U5H_039, IL_1VW3_019, IL_4A1C_003, IL_3B31_001, IL_3U5H_089, IL_3J7A_025, IL_2XXA_010, IL_1VX6_033, IL_2XXA_012, IL_4CUV_016, IL_1VX6_036, IL_1VX6_037, IL_1S72_086, IL_2NOK_006, IL_4CUV_037, IL_1VX6_116, IL_1I9X_001, IL_2NOK_003, IL_2QBG_080, IL_1I9X_002, IL_1S72_014, IL_4IOA_057, IL_4A1B_010, IL_1VX6_119, IL_4BPP_075, IL_2AW7_026, IL_2QBG_089, IL_4CUV_034, IL_3SNP_001, IL_3U5H_143, IL_1FJG_040, IL_2QBG_007, IL_1FJG_043, IL_3U5H_003, IL_1S72_064, IL_1S72_067, IL_4A1B_072, IL_4CUV_093, IL_1S72_088, IL_4QCN_068, IL_2PLY_002, IL_3J7A_009, IL_4QCN_065, IL_2QBG_035, IL_1FUF_002, IL_3U5F_026, IL_3J7A_001, IL_3U5F_024, IL_1VW3_087, IL_3Q1Q_004, IL_3IWN_004, IL_3IWN_003, IL_1VW3_082, IL_1VX6_044, IL_4BPP_031, IL_4CUV_017, IL_1VW3_088, IL_2OIU_003, IL_2OIU_001, IL_4BPP_030, IL_4BPP_072, IL_4LGT_002, IL_3W3S_002, IL_4CUV_076, IL_1VX6_032, IL_2QBG_104, IL_1VW3_018, IL_2AW7_008, IL_2C4Z_001, IL_1NBS_002, IL_3U5H_014, IL_2PJP_001, IL_1S72_074, IL_2AW7_001, IL_1VX6_040, IL_4IOA_024, IL_3U5H_013, IL_4CUX_031, IL_4CUX_030, IL_4QCN_055, IL_3J7A_027, IL_3U5H_152, IL_2QBG_073, IL_3U5F_031, IL_4O26_001, IL_3U5F_033, IL_4CUV_089, IL_3OWZ_005, IL_1VW3_052, IL_1JZV_002, IL_1VX6_058, IL_1VW3_091, IL_3U5H_092, IL_3U5H_093, IL_3SUX_001, IL_1JZV_005, IL_3U5H_055, IL_3U5H_098, IL_4CUV_003, IL_1VX6_053, IL_4BPP_064, IL_4A1B_039, IL_4BPP_067, IL_3U5H_030, IL_4CUV_101, IL_4A1C_002, IL_4CUX_066, IL_2BU1_001, IL_4CUV_065, IL_4CUV_108, IL_3R2D_001, IL_1DUQ_002, IL_3U5H_025, IL_2AW7_017, IL_4A1B_011, IL_3U5H_026, IL_3U5H_142, IL_1VW3_028, IL_3U5H_140, IL_2AW7_019, IL_4IOA_034, IL_3DHS_002, IL_3J7A_021, IL_2QBG_069, IL_4QCN_044, IL_4CUX_025, IL_3U5F_009, IL_2QBG_023, IL_1S72_002, IL_4A1B_105, IL_3DHS_003, IL_3U5F_001, IL_3D0U_001, IL_1VX6_061, IL_4BPP_025, IL_2IZN_001, IL_1VX6_066, IL_1ET4_002, IL_1VX6_103, IL_1VX6_100, IL_2AW7_002, IL_3IVK_003, IL_1VX6_105, IL_4IOA_031, IL_2IZM_001, IL_1VX6_001, IL_4BPP_009, IL_4CUV_059, IL_1U63_002, IL_1X8W_001, IL_4CUV_056, IL_4CUV_051, IL_4CUV_119, IL_1FJG_016, IL_4A1B_006, IL_1FJG_014, IL_1VX6_014, IL_1S72_096, IL_4A1B_123, IL_3DIR_001, IL_4A1B_121, IL_1U9S_001, IL_3DIR_005, IL_3U5H_131, IL_4A1B_124, IL_4A1B_076, IL_1S03_006, IL_1S03_005, IL_1S72_010, IL_3U5F_018, IL_1R3E_001, IL_4B5R_001, IL_1R3E_002, IL_4CUX_053, IL_3J7A_014, IL_4IOA_011, IL_4QCN_037, IL_2A64_003, IL_4QCN_034, IL_4A1B_095, IL_2A64_002, IL_4C7O_004, IL_2IZ9_001, IL_2ZY6_002, IL_4CUV_042, IL_4KZD_001, IL_4LVZ_002, IL_2QBG_070, IL_1ET4_004, IL_4QCN_098, IL_1VX6_016, IL_4A1B_031, IL_4ANG_001, IL_4A1B_036, IL_1FJG_007, IL_4IOA_016, IL_1FJG_001, IL_1FJG_002, IL_4IOA_015, IL_1VX6_090, IL_4A1B_131, IL_1S72_077, IL_1VX6_093, IL_3U5F_066, IL_1VW3_041, IL_1VW3_004, IL_4FRG_002, IL_3MEI_001, IL_1S72_027, IL_1S72_026, IL_3U5F_069, IL_3U5H_002, IL_1MFQ_005, IL_4CUV_150, IL_3J7A_041, IL_3P49_003, IL_3U5H_129, IL_1GID_012, IL_1VX6_129, IL_4A1B_084, IL_3OWZ_001, IL_4BPP_053, IL_4BPP_055, IL_4BPP_054, IL_3SN2_001, IL_2AW7_048, IL_1VX6_026, IL_4L8H_001, IL_1DQH_001, IL_4BPP_033, IL_4C7O_001, IL_2AW7_043, IL_2AW7_042, IL_1FJG_035, IL_4A1B_023, IL_1FJG_036, IL_3WBM_001, IL_2VPL_002, IL_4IOA_064, IL_3U5H_115, IL_2QUX_002, IL_1NBS_001, IL_3U5H_119, IL_3UCZ_002, IL_4A1B_101, IL_4A1B_100, IL_4CUV_094, IL_3U5H_050, IL_1S72_030, IL_3U5H_125, IL_1VW3_055, IL_3U5H_058, IL_4CUV_002, IL_3U5H_034, IL_2QBG_038, IL_3J7A_051, IL_3J7A_052, IL_1F7Y_002, IL_3UCZ_003, IL_3J7A_056, IL_6MSF_001, IL_3J7A_059, IL_4CUV_123, IL_4AOB_001, IL_4QCN_019, IL_1NBS_005	IL_4W21_089, IL_4W21_168, IL_4W21_123, IL_4W21_161, IL_4W21_166, IL_4W21_129, IL_4W21_052, IL_4W23_031, IL_4W23_054, IL_1S72_045, IL_4W21_032, IL_4W21_077, IL_4W21_057, IL_4W21_078, IL_4W23_058, IL_4R0D_019, IL_4W21_086, IL_4W21_017, IL_4W21_030, IL_4QJH_005, IL_4W21_014, IL_4W21_115, IL_4W21_099, IL_4W21_133, IL_4W21_119, IL_4W21_143, IL_4W23_024, IL_4W23_022, IL_4W23_061, IL_4W21_028, IL_4R0D_005, IL_4W21_060, IL_4W21_044, IL_4W21_023, IL_4R0D_008, IL_4W21_001, IL_4W21_002, IL_4W21_102	IL_1VX2_030, IL_1VWW_080, IL_1VWW_062, IL_1VWW_065, IL_1VX2_057, IL_1VWW_045, IL_1VWW_101, IL_1VWW_029, IL_1VWW_104, IL_1VWW_001, IL_1VWW_123, IL_1VWW_023, IL_1VWW_017, IL_1VX2_022, IL_1VX2_024, IL_1VWW_090, IL_1VWW_158, IL_1VWW_079, IL_1VWW_155, IL_1VX2_060, IL_1VWW_056, IL_1VWW_031, IL_1VWW_118, IL_1VWW_131, IL_1VX6_057, IL_1VWW_014, IL_1VWW_134
IL_55210.1 Compare	IL_1S72_045	IL_4CUV_149, IL_4W21_168, IL_4CUV_142, IL_4BPP_022, IL_4BPP_024, IL_4W21_166, IL_1U9S_003, IL_1VW3_064, IL_1VW3_067, IL_1VW3_069, IL_4BPP_021, IL_4CUV_136, IL_4CUV_134, IL_4W21_115, IL_4W21_161, IL_4CUV_130, IL_1VX6_138, IL_4CUV_146, IL_3U5F_058, IL_3U5F_059, IL_3U5F_056, IL_1GID_005, IL_1GID_002, IL_1VX6_116, IL_1VX6_119, IL_4BPP_075, IL_3SNP_001, IL_4QCN_068, IL_4QCN_065, IL_3U5F_026, IL_3U5F_024, IL_3Q1Q_004, IL_2AW7_008, IL_3U5H_014, IL_2AW7_001, IL_4W23_022, IL_2AW7_002, IL_4CUX_031, IL_4CUX_030, IL_4W21_060, IL_3U5H_152, IL_4O26_001, IL_4CUV_089, IL_1VX6_058, IL_1VX6_053, IL_4BPP_064, IL_4W21_089, IL_4BPP_067, IL_4W21_123, IL_4CUV_101, IL_4CUV_065, IL_4W21_086, IL_4CUV_108, IL_1DUQ_002, IL_1VW3_028, IL_4IOA_034, IL_4W21_017, IL_4W21_014, IL_3IVK_003, IL_1FUF_002, IL_4W21_119, IL_1S72_096, IL_3DIR_001, IL_3DIR_005, IL_4R0D_005, IL_1R3E_001, IL_4R0D_008, IL_1R3E_002, IL_4IOA_011, IL_4LVZ_002, IL_3U5F_033, IL_3U5F_066, IL_1S72_027, IL_1S72_026, IL_3U5F_069, IL_3J7A_041, IL_2AW7_048, IL_1VX6_026, IL_2AW7_043, IL_2AW7_042, IL_4A1B_023, IL_3WBM_001, IL_3U5H_115, IL_3U5H_119, IL_4CUV_002, IL_4AOB_001, IL_4QCN_019, IL_1GID_009, IL_4CUV_023, IL_1FJG_022, IL_4CUV_029, IL_4IOA_075, IL_4A1B_059, IL_4A1B_116, IL_4A1B_051, IL_4A1B_050, IL_4A1B_056, IL_2C50_001, IL_3U5H_065, IL_4W23_054, IL_3D2V_001, IL_4W21_057, IL_4CUX_063, IL_4CUX_066, IL_4W23_058, IL_3U5H_077, IL_3TZR_002, IL_4CUV_158, IL_4CUV_150, IL_4BPP_016, IL_4BPP_013, IL_4W21_044, IL_2XXA_010, IL_2XXA_012, IL_2NOK_006, IL_2NOK_003, IL_3U5H_026, IL_2QBG_007, IL_1S72_064, IL_1GID_012, IL_2PLY_002, IL_3J7A_009, IL_3J7A_001, IL_1VW3_087, IL_1VW3_082, IL_1VW3_088, IL_4LGT_002, IL_2PJP_001, IL_4QCN_055, IL_2QBG_073, IL_3U5F_031, IL_2QBG_070, IL_3SUX_001, IL_3U5H_025, IL_2AW7_017, IL_4A1B_011, IL_4A1B_010, IL_3U5H_142, IL_3U5H_143, IL_3U5H_140, IL_2AW7_019, IL_4CUX_025, IL_1VX6_061, IL_1VX6_066, IL_1VX6_103, IL_1VX6_100, IL_1VX6_105, IL_2IZM_001, IL_4CUV_059, IL_4W21_133, IL_4CUV_056, IL_4CUV_051, IL_4CUV_119, IL_1FJG_016, IL_1FJG_014, IL_4A1B_123, IL_4A1B_121, IL_4A1B_124, IL_4B5R_001, IL_4CUX_053, IL_4W21_001, IL_4W21_002, IL_2IZ9_001, IL_2ZY6_002, IL_1VW3_041, IL_1FJG_043, IL_4FRG_002, IL_4BPP_053, IL_4BPP_055, IL_4BPP_054, IL_1DQH_001, IL_3R2D_001, IL_3UCZ_002, IL_2QBG_035, IL_2QBG_038, IL_3J7A_051, IL_3J7A_052, IL_3J7A_056, IL_3J7A_059, IL_1VX6_135, IL_2PN4_003, IL_4ANG_001, IL_2AW7_051, IL_3U5H_105, IL_3U5H_103, IL_4QCN_002, IL_1VX6_140, IL_4IOA_002, IL_1CSL_002, IL_2AW7_029, IL_3B31_001, IL_4A1B_044, IL_2AW7_026, IL_4A1B_113, IL_4CUX_017, IL_3U5H_089, IL_1VX6_032, IL_1VX6_033, IL_1VX6_036, IL_1VX6_037, IL_2QBG_080, IL_4BPP_009, IL_4W21_143, IL_2QBG_089, IL_1FJG_040, IL_1VW3_004, IL_6MSF_001, IL_4QJH_005, IL_4CUV_017, IL_4CUV_016, IL_2OIU_003, IL_2OIU_001, IL_2C4Z_001, IL_1S72_077, IL_1S72_074, IL_3J7A_014, IL_1S72_040, IL_1VW3_091, IL_4W21_052, IL_4W23_024, IL_2QBG_069, IL_4QCN_044, IL_2QBG_104, IL_3U5F_009, IL_1S72_002, IL_3U5F_001, IL_3D0U_001, IL_4BPP_025, IL_3U5H_013, IL_2A64_003, IL_2A64_002, IL_1VX6_001, IL_4C7O_004, IL_4C7O_001, IL_3U5H_034, IL_3U5H_030, IL_3U5H_136, IL_3U5H_131, IL_3U5H_039, IL_1S03_006, IL_1S03_005, IL_4QCN_037, IL_4QCN_034, IL_4A1B_095, IL_4CUV_042, IL_1FJG_007, IL_4IOA_016, IL_1FJG_001, IL_1FJG_002, IL_4IOA_015, IL_1VX6_090, IL_4A1B_131, IL_1VX6_093, IL_3MEI_001, IL_2VPL_002, IL_2QBG_099, IL_3P49_003, IL_4W21_030, IL_4W21_032, IL_4BPP_033, IL_4BPP_031, IL_4BPP_030, IL_2QUX_002, IL_1VW3_052, IL_1VW3_055, IL_1F7Y_002, IL_4CUV_123, IL_4W21_102, IL_4L8H_001, IL_3SN2_001, IL_2QBG_023, IL_1VX6_126, IL_1VX6_129, IL_4W21_129, IL_4FAW_004, IL_1ET4_004, IL_1ET4_002, IL_4QCN_076, IL_1I9X_001, IL_1I9X_002, IL_4IOA_057, IL_4IOA_031, IL_4A1B_076, IL_3U5H_003, IL_3U5H_002, IL_4W23_031, IL_4A1B_072, IL_4CUV_093, IL_4CUV_094, IL_4W21_077, IL_4W21_078, IL_4CUX_001, IL_1U9S_001, IL_3GX5_001, IL_3IWN_004, IL_3IWN_003, IL_1VX6_044, IL_1VX6_040, IL_4W21_099, IL_4BPP_072, IL_4CUV_076, IL_1VW3_018, IL_1VW3_019, IL_1MFQ_005, IL_4IOA_024, IL_3OWZ_005, IL_4IOA_064, IL_3OWZ_001, IL_3U5H_092, IL_3U5H_093, IL_3U5H_098, IL_4CUV_003, IL_2BQ5_001, IL_4A1C_003, IL_4A1C_002, IL_2BU1_001, IL_3UCZ_003, IL_1S72_086, IL_1S72_088, IL_3J7A_021, IL_3W3S_001, IL_3W3S_002, IL_3J7A_025, IL_3J7A_027, IL_4R0D_019, IL_2IZN_001, IL_4KZD_001, IL_1U63_002, IL_1S72_030, IL_3U5H_055, IL_3U5F_016, IL_1S72_010, IL_3U5F_018, IL_1S72_014, IL_4A1B_039, IL_1VX6_014, IL_4QCN_098, IL_1VX6_016, IL_4A1B_031, IL_4A1B_036, IL_3U5H_129, IL_3U5H_125, IL_4QCN_020, IL_4A1B_088, IL_1S72_067, IL_1X8W_001, IL_4A1B_084, IL_4CUV_037, IL_4CUV_034, IL_1FJG_035, IL_1FJG_036, IL_1JZV_002, IL_1JZV_005, IL_4A1B_105, IL_4A1B_101, IL_4A1B_100, IL_3U5H_050, IL_4W23_061, IL_4W21_028, IL_1FUF_003, IL_1S72_104, IL_3U5H_058, IL_4W21_023, IL_4A1B_006, IL_3DHS_003, IL_1NBS_009, IL_1NBS_001, IL_1NBS_002, IL_3DHS_002, IL_1NBS_005

Children motifs

This motif has no children motifs.

Annotations: (282)
Single bulged A (19)
Single bulged U (18)
Single bulged A (H) (11)
Single bulged U (H) (8)
Single bulged C (7)
Multiple bulged bases (6)
Single bulged G (H) (5)
Major groove intercalation (4)
Single bulged G (4)
Multiple bulged bases (H) (2)
Major groove intercalation (H) (2)
Single bulged C (H) (2)
Bulged stacked bases (H) (1)
Basepair signature: cWW-cWW
Heat map statistics: Min 0.04 | Avg 0.43 | Max 1.00

Help

Coloring options: Nucleotide numbers

Motif IL_48256.2 Version IL_48256.2 of this group appears in releases 1.18 to 1.18 Download Csv Json

3D structures

Complete motif including flanking bases

Non-Watson-Crick part of the motif

Release history

Parent motifs

Children motifs

Motif IL_48256.2 Version IL_48256.2 of this group appears in releases 1.18 to 1.18

Download

Csv

Json