Motif IL_48375.1 Version IL_48375.1 of this group appears in releases 0.2 to 0.2
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 8 | 1-8 | 2-7 | 3-6 | 4-5 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_2QBZ_003 | 2QBZ | 0.0000 | 1 | X | M-Box RNA, ykoK riboswitch aptamer | U | 28 | G | 29 | A | 30 | G | 31 | * | U | 153 | A | 154 | A | 156 | G | 157 | cWW | tSH | tHS | cWW |
| 2 | IL_3F1H_086 | 3F1H | 0.5151 | 0 | A | 23S RRNA | C | 2350 | G | 2351 | A | 2352 | G | 2353 | * | C | 2364 | G | 2365 | A | 2366 | G | 2367 | cWW | ntSH | ntHS | cWW |
| 3 | IL_3DIR_002 | 3DIR | 0.5665 | 0 | A | RNA (174-MER) | C | 70 | G | 71 | A | 72 | G | 73 | * | C | 19 | G | 20 | A | 21 | G | 22 | cWW | tSH | tHS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CGAG*CGAG | 2 |
| UGAG*UAAAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GA*GA | 2 |
| GA*AAA | 1 |
Release history
| Release | 0.2 |
|---|---|
| Date | 2011-12-08 |
| Status | New id, 2 parents |
Parent motifs
| Parent motif | Common motif instances | Only in IL_48375.1 | Only in the parent motif |
|---|---|---|---|
| IL_55389.1 Compare | IL_3F1H_086, IL_3DIR_002 | IL_2QBZ_003 | IL_2ZJR_057, IL_2DR2_001, IL_1SAQ_002, IL_1FJG_059, IL_2O3Y_003, IL_2ZJR_082, IL_1SA9_002, IL_3D0U_002, IL_1SA9_001, IL_1S72_098 |
| IL_52375.1 Compare | IL_2QBZ_003 | IL_3F1H_086, IL_3DIR_002 |
Children motifs
| Child motif | Common motif instances | Only in IL_48375.1 | Only in the child motif |
|---|---|---|---|
| IL_63091.1 Compare | IL_2QBZ_003, IL_3DIR_002, IL_3F1H_086 | IL_2ZJR_057, IL_1S72_098, IL_1SAQ_002 |
Coloring options: