Motif IL_48489.1 Version IL_48489.1 of this group appears in releases 4.0 to 4.5
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | break | 7 | 8 | 9 | 10 | 1-10 | 2-9 | 3-8 | 5-8 | 6-7 | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_9DFE_109 | 9DFE | 0.3579 | 1 | 1A | LSU rRNA | U | 2847 | G | 2848 | U | 2849 | A | 2850 | A | 2851 | G | 2852 | * | U | 2865 | U | 2866 | A | 2868 | G | 2869 | cWW | tSH | tHH | cWW | ||
| 2 | IL_8B0X_170 | 8B0X | 0.3556 | 1 | tHS double platform (H) | a | LSU rRNA | U | 2851 | G | 2852 | U | 2853 | A | 2854 | A | 2855 | G | 2856 | * | U | 2869 | U | 2870 | A | 2872 | G | 2873 | cWW | tSH | tHH | cWW | |
| 3 | IL_4WF9_108 | 4WF9 | 0.2218 | 1 | tHS double platform | X | LSU rRNA | U | 2867 | G | 2868 | G | 2869 | A | 2870 | A | 2871 | G | 2872 | * | U | 2885 | G | 2886 | A | 2888 | G | 2889 | cWW | ntSH | tSS | tHH | cWW |
| 4 | IL_9AXU_121 | 9AXU | 0.1088 | 1 | 2 | LSU rRNA | U | 3433 | G | 3434 | U | 3435 | A | 3436 | A | 3437 | G | 3438 | * | C | 3468 | U | 3469 | A | 3471 | G | 3472 | cWW | tSH | tHH | cWW | ||
| 5 | IL_8P9A_360 | 8P9A | 0.0576 | 1 | AR | LSU rRNA | U | 3332 | G | 3333 | U | 3334 | A | 3335 | A | 3336 | G | 3337 | * | C | 3367 | U | 3368 | A | 3370 | G | 3371 | cWW | ntSH | tHH | cWW | ||
| 6 | IL_8OI5_130 | 8OI5 | 0.0000 | 1 | 1 | LSU rRNA | U | 3297 | G | 3298 | U | 3299 | A | 3300 | A | 3301 | G | 3302 | * | C | 3332 | U | 3333 | A | 3335 | G | 3336 | cWW | tSH | tHH | cWW | ||
| 7 | IL_7A0S_101 | 7A0S | 0.1036 | 1 | X | LSU rRNA | U | 2822 | G | 2823 | C | 2824 | A | 2825 | C | 2826 | G | 2827 | * | U | 2840 | U | 2841 | A | 2843 | G | 2844 | cWW | ntSH | tHH | cWW | ||
| 8 | IL_4V9F_099 | 4V9F | 0.1083 | 1 | tHS double platform | 0 | LSU rRNA | U | 2864 | G | 2865 | U | 2866 | G | 2867 | C | 2868 | G | 2869 | * | U | 2888 | U | 2889 | A | 2891 | G | 2892 | cWW | tSH | tHH | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UGUAAG*CUGAG | 3 |
| UGUAAG*UUGAG | 2 |
| UGGAAG*UGGAG | 1 |
| UGCACG*UUCAG | 1 |
| UGUGCG*UUAAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GUAA*UGA | 5 |
| GGAA*GGA | 1 |
| GCAC*UCA | 1 |
| GUGC*UAA | 1 |
- Annotations
-
- (5)
- tHS double platform (2)
- tHS double platform (H) (1)
- Basepair signature
- cWW-tSH-L-tHH-L-cWW
- Heat map statistics
- Min 0.06 | Avg 0.22 | Max 0.41
Coloring options: