Motif IL_49493.2 Version IL_49493.2 of this group appears in releases 0.7 to 1.0

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name		1		2		3		4		5		6		7	break		8		9		10		11		12		13	1-13	2-12	3-11	4-5	5-10	6-9	7-8
1	IL_2XZM_054	2XZM	0.1987	1		A	18S RRNA	G	1083	A	1084	A	1085	G	1086	U	1087	A	1088	G	1090	*	U	1102	G	1103	A	1104	A	1105	A	1106	C	1107	cWW	tSH			ntWH	tHS	ncWW
2	IL_1S72_049	1S72	0.2548	0		0	LSU rRNA	A	1367	U	1368	A	1369	G	1370	U	1371	A	1372	G	1373	*	U	2052	G	2053	A	2054	A	2055	C	2056	U	2057	cWW	tSH	tHH	cSH	tWH	tHS	cWW
3	IL_4A1B_064	4A1B	0.2141	0		1	26S RRNA	G	1470	U	1471	A	1472	G	1473	U	1474	A	1475	G	1476	*	C	2349	G	2350	A	2351	A	2352	C	2353	C	2354	cWW	ntSH	tHH	cSH	tWH	tHS	cWW
4	IL_3U5H_066	3U5H	0.2124	0		5	25S rRNA	G	1444	U	1445	A	1446	G	1447	U	1448	A	1449	G	1450	*	C	2354	G	2355	A	2356	A	2357	A	2358	C	2359	cWW	tSH	tHH	cSH	tWH	tHS	cWW
5	IL_1S72_090	1S72	0.1797	0		0	LSU rRNA	A	2689	U	2690	A	2691	G	2692	U	2693	A	2694	C	2695	*	G	2700	G	2701	A	2702	A	2703	C	2704	U	2705	cWW	tSH	tHH	cSH	tWH	tHS	cWW
6	IL_1NBS_007	1NBS	0.0000	0	7x6 Sarcin-Ricin; G-bulge	B	RNase P class B	U	165	G	166	A	167	G	168	U	169	A	170	U	171	*	A	138	A	139	A	140	A	141	A	142	A	143	cWW	ntSH	tHH	cSH	ntWH	tHS	cWW
7	IL_1S72_103	1S72	0.1556	0		9	5S rRNA	G	75	G	76	A	77	G	78	U	79	A	80	C	81	*	G	101	G	102	A	103	A	104	A	105	C	106	cWW	tSH	tHH	cSH	tWH	tHS	cWW
8	IL_2QBG_012	2QBG	0.2097	0		B	23S rRNA	C	239	C	240	A	241	G	242	U	243	A	244	G	245	*	C	253	G	254	A	255	A	256	C	257	G	258	cWW	tSH	tHH	cSH	tWH	tHS	cWW
9	IL_1S72_007	1S72	0.2355	0		0	LSU rRNA	U	210	U	211	A	212	G	213	U	214	A	215	A	216	*	U	224	G	225	A	226	A	227	C	228	G	229	cWW	tSH	tHH	cSH	tWH	tHS	cWW
10	IL_3V2F_007	3V2F	0.2321	0		A	23S Ribosomal RNA	U	239	G	240	A	241	G	242	U	243	A	244	G	245	*	C	253	G	254	A	255	A	256	A	257	G	258	cWW	tSH	tHH	cSH	tWH	tHS	cWW
11	IL_3DVZ_001	3DVZ	0.2327	0		A	Sarcin/Ricin Domain from E. Coli 23 S rRNA	C	2652	U	2653	A	2654	G	2655	U	2656	A	2657	C	2658	*	G	2663	G	2664	A	2665	C	2666	C	2667	G	2668	cWW			cSH	tWH	tHS	cWW
12	IL_1S72_020	1S72	0.2347	0		0	LSU rRNA	C	585	C	586	A	587	G	588	U	589	A	590	A	591	*	U	567	G	568	A	569	C	570	C	571	G	572	cWW	ncWB		cSH	tWH	tHS	cWW
13	IL_2ZJR_095	2ZJR	0.3036	0		X	LSU rRNA	C	2631	U	2632	A	2633	G	2634	U	2635	A	2636	C	2637	*	G	2642	G	2643	A	2644	C	2645	C	2646	G	2647	cWW			ncSH	tWH	tHS	cWW
14	IL_3V2F_099	3V2F	0.3340	0		A	23S Ribosomal RNA	C	2652	U	2653	A	2654	G	2655	U	2656	A	2657	C	2658	*	G	2663	G	2664	A	2665	C	2666	C	2667	G	2668	cWW			cSH	tWH	tHS	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
CUAGUAC*GGACCG	3
GAAGUAUG*UGAAAC	1
AUAGUAG*UGAACU	1
GUAGUAG*CGAACC	1
GUAGUAG*CGAAAC	1
AUAGUAC*GGAACU	1
UGAGUAU*AAAAAA	1
GGAGUAC*GGAAAC	1
CCAGUAG*CGAACG	1
UUAGUAA*UGAACG	1
UGAGUAG*CGAAAG	1
CCAGUAA*UGACCG	1

Non-Watson-Crick part of the motif

Sequence	Counts
UAGUA*GAAC	4
UAGUA*GACC	3
GAGUA*GAAA	2
AAGUAU*GAAA	1
UAGUA*GAAA	1
GAGUA*AAAA	1
CAGUA*GAAC	1
CAGUA*GACC	1

Release history

Release	0.7	0.8	0.9	0.10	0.11	0.12	1.0
Date	2013-02-17	2013-02-17	2013-02-17	2013-02-17	2013-02-17	2013-02-17	2013-03-04
Status	Updated, 1 parent	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match

Parent motifs

Parent motif	Common motif instances	Only in IL_49493.2	Only in the parent motif
IL_49493.1 Compare	IL_1S72_103, IL_3U5H_066, IL_3DVZ_001, IL_2ZJR_095, IL_1S72_007, IL_1S72_020, IL_1S72_049, IL_1S72_090, IL_2XZM_054, IL_4A1B_064, IL_2QBG_012, IL_1NBS_007	IL_3V2F_099, IL_3V2F_007	IL_3UXR_099, IL_3UXR_007

Children motifs

Child motif	Common motif instances	Only in IL_49493.2	Only in the child motif
IL_49493.3 Compare	IL_1S72_103, IL_3U5H_066, IL_3DVZ_001, IL_3V2F_099, IL_1S72_007, IL_1S72_020, IL_1S72_049, IL_1S72_090, IL_2XZM_054, IL_4A1B_064, IL_2QBG_012, IL_3V2F_007, IL_1NBS_007	IL_2ZJR_095	IL_4IOA_096

Annotations: 7x6 Sarcin-Ricin; G-bulge (1)
Basepair signature: cWW-tSH-tHH-cSH-tWH-tHS-cWW
Heat map statistics: Min 0.11 | Avg 0.25 | Max 0.43

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Coloring options: Nucleotide numbers

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