Motif IL_49841.1 Version IL_49841.1 of this group appears in releases 2.0 to 2.0
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | break | 7 | 8 | 9 | 1-3 | 1-9 | 2-8 | 3-7 | 4-9 | 5-8 | 6-7 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_5A2Q_027 | 5A2Q | 0.9259 | 1 | C-loop with extra cWW pair (H) | 2 | SSU rRNA | C | 491 | C | 492 | A | 493 | C | 494 | U | 495 | C | 496 | * | G | 506 | A | 508 | G | 509 | cSH | cWW | tWH | ncWW | cWW | ||
| 2 | IL_4V88_408 | 4V88 | 0.9152 | 1 | C-loop with extra cWW pair | A6 | SSU rRNA | C | 443 | C | 444 | A | 445 | A | 446 | U | 447 | C | 448 | * | G | 458 | A | 460 | G | 461 | cSH | cWW | tWH | cWS | cWW | cWW | |
| 3 | IL_3J7A_022 | 3J7A | 0.9145 | 1 | C-loop with extra cWW pair (H) | A | SSU rRNA | C | 449 | C | 450 | A | 451 | A | 452 | U | 453 | U | 454 | * | A | 464 | A | 466 | G | 467 | ncSH | cWW | tWH | cWS | cWW | cWW | |
| 4 | IL_3J7P_202 | 3J7P | 0.1797 | 0 | S2 | SSU rRNA | A | 1042 | G | 1043 | G | 1044 | U | 1045 | U | 1046 | C | 1047 | * | G | 1071 | U | 1072 | U | 1073 | ncWW | ncWw | cWW | |||||
| 5 | IL_5A2Q_050 | 5A2Q | 0.1128 | 0 | 2 | SSU rRNA | A | 1042 | G | 1043 | G | 1044 | U | 1045 | U | 1046 | C | 1047 | * | G | 1071 | U | 1072 | U | 1073 | cWW | cWw | cWW | |||||
| 6 | IL_4BTS_308 | 4BTS | 0.0000 | 0 | DA | SSU rRNA | G | 963 | G | 964 | G | 965 | A | 966 | U | 967 | C | 968 | * | G | 992 | U | 993 | C | 994 | cWW | ntSH | cWw | cWW | ||||
| 7 | IL_4V88_435 | 4V88 | 0.1863 | 0 | Other IL | A6 | SSU rRNA | G | 985 | G | 986 | G | 987 | A | 988 | U | 989 | C | 990 | * | G | 1014 | U | 1015 | C | 1016 | cWW | cWw | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| AGGUUC*GUU | 2 |
| GGGAUC*GUC | 2 |
| CCACUC*GGAG | 1 |
| CCAAUC*GGAG | 1 |
| CCAAUU*AGAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CAAU*GA | 2 |
| GGUU*U | 2 |
| GGAU*U | 2 |
| CACU*GA | 1 |
Release history
| Release | 2.0 |
|---|---|
| Date | 2017-04-24 |
| Status | New id, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (3)
- C-loop with extra cWW pair (H) (2)
- C-loop with extra cWW pair (1)
- Other IL (1)
- Basepair signature
- cWW-tWH-cSH-L-cWW-cWW
- Heat map statistics
- Min 0.09 | Avg 0.51 | Max 0.97
Coloring options: