Motif IL_50521.1 Version IL_50521.1 of this group appears in releases 0.5 to 1.18
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | break | 8 | 9 | 10 | 11 | 12 | 13 | 14 | 1-14 | 2-13 | 3-11 | 4-9 | 5-11 | 6-9 | 7-8 | 10-12 | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_1FJG_017 | 1FJG | 0.0000 | 1 | A | SSU rRNA | G | 409 | G | 410 | A | 411 | G | 413 | A | 414 | A | 415 | G | 416 | * | U | 427 | G | 428 | U | 429 | A | 430 | A | 431 | A | 432 | C | 433 | cWW | tSH | tWH | tSS | tHW | tHH | cWW | cWH | |
| 2 | IL_2AW7_020 | 2AW7 | 0.3102 | 1 | A | 16S ribosomal RNA | U | 409 | G | 410 | A | 411 | G | 413 | A | 414 | A | 415 | G | 416 | * | U | 427 | G | 428 | U | 429 | A | 430 | A | 431 | A | 432 | G | 433 | cWW | tSH | tWH | ntHW | ncWW | cWW | cWH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GGAAGAAG*UGUAAAC | 1 |
| UGAAGAAG*UGUAAAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GAAGAA*GUAAA | 2 |
Release history
| Release | 0.5 | 0.6 | 0.7 | 0.8 | 0.9 | 0.10 | 0.11 | 0.12 | 1.0 | 1.1 | 1.2 | 1.3 | 1.4 | 1.5 | 1.6 | 1.7 | 1.8 | 1.9 | 1.10 | 1.11 | 1.12 | 1.13 | 1.14 | 1.15 | 1.17 | 1.18 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2011-12-08 | 2012-04-02 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-03-04 | 2013-04-08 | 2013-05-04 | 2013-06-01 | 2013-07-01 | 2013-08-03 | 2013-08-31 | 2013-09-28 | 2013-11-05 | 2013-12-07 | 2014-01-04 | 2014-02-01 | 2014-03-01 | 2014-03-29 | 2014-04-27 | 2014-06-20 | 2014-09-04 | 2014-10-07 |
| Status | New id, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
| Parent motif | Common motif instances | Only in IL_50521.1 | Only in the parent motif |
|---|---|---|---|
| IL_95275.1 Compare | IL_1FJG_017 | IL_2AW7_020 |
Children motifs
This motif has no children motifs.- Annotations
- Basepair signature
- cWW-tSH-cWH-tWH-tSS-tHW-L-cWW
- Heat map statistics
- Min 0.31 | Avg 0.16 | Max 0.31
Coloring options: