Motif IL_50730.1 Version IL_50730.1 of this group appears in releases 3.91 to 3.94

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name		1		2		3		4		5	break		6		7		8		9		10	1-10	2-9	3-8	4-7	5-6
1	IL_8P9A_258	8P9A	0.3772	0	Triple sheared (H)	AR	LSU rRNA	U	855	G	856	G	857	A	858	G	859	*	U	834	G	835	A	836	A	837	G	838	cWW	tSH	tSH	tHS	cWW
2	IL_4WF9_024	4WF9	0.3396	0	Triple sheared	X	LSU rRNA	U	769	G	770	G	771	A	772	G	773	*	U	748	G	749	A	750	A	751	G	752	cWW	tSH	tSH		cWW
3	IL_4V9F_027	4V9F	0.3299	0	Triple sheared	0	LSU rRNA	U	815	G	816	G	817	A	818	A	819	*	U	794	G	795	A	796	A	797	G	798	cWW	tSH	tSH	ntHS	cWW
4	IL_5J7L_263	5J7L	0.3343	0	Triple sheared	DA	LSU rRNA	U	724	G	725	G	726	A	727	G	728	*	U	703	G	704	A	705	A	706	G	707	cWW	tSH	tSH	tHS	cWW
5	IL_9DFE_019	9DFE	0.3313	0	Triple sheared (H)	1A	LSU rRNA	U	724	G	725	G	726	A	727	G	728	*	U	703	G	704	A	705	A	706	G	707	cWW	tSH	tSH	tHS	cWW
6	IL_5J7L_310	5J7L	0.2262	0	Triple sheared	DA	LSU rRNA	U	1736	G	1737	G	1738	A	1739	G	1740	*	U	1720	G	1721	A	1722	G	1723	G	1724	cWW	ntSH	tSH	tHS	cWW
7	IL_8P9A_295	8P9A	0.1777	0	Triple sheared (H)	AR	LSU rRNA	A	1806	G	1807	G	1808	A	1809	A	1810	*	U	1645	G	1646	A	1647	A	1648	U	1649	cWW	tSH	ntSH	tHS	cWW
8	IL_9DFE_075	9DFE	0.0000	0	Triple sheared (H)	1A	LSU rRNA	G	1856	G	1857	G	1858	A	1859	G	1860	*	C	1882	G	1883	A	1884	A	1885	C	1886	cWW	tSH	tSH	tHS	cWW
9	IL_7A0S_070	7A0S	0.2644	0	Triple sheared	X	LSU rRNA	U	1848	G	1849	G	1850	A	1851	G	1852	*	C	1865	G	1866	A	1867	A	1868	A	1869	cWW	tSH		ntHS	cWW
10	IL_2A64_006	2A64	0.2069	0	Triple sheared	A	ribonuclease P RNA	C	347	G	348	G	349	A	350	G	351	*	C	378	G	379	A	380	A	381	G	382	cWW	tSH	tSH		cWW
11	IL_2A64_005	2A64	0.2012	0	Triple sheared	A	ribonuclease P RNA	C	297	G	298	G	299	A	300	G	301	*	C	284	G	285	A	286	A	287	G	288	cWW	tSH	ntSH	tHS	cWW
12	IL_8C3A_480	8C3A	0.1882	0	Triple sheared	CM	SSU rRNA	C	1665	G	1666	G	1667	A	1668	U	1669	*	A	1706	G	1707	A	1708	A	1709	G	1710	cWW	tSH	ntSH	ntWS	cWW
13	IL_8P9A_463	8P9A	0.2091	0	Triple sheared (H)	sR	SSU rRNA	A	1678	G	1679	G	1680	A	1681	U	1682	*	A	1719	G	1720	A	1721	A	1722	U	1723	cWW	tSH	tSH		cWW
14	IL_3IGI_002	3IGI	0.2793	0	Triple sheared	A	Group IIC intron	G	113	G	114	A	115	C	116	G	117	*	C	70	U	71	A	72	A	73	C	74	cWW	tSH		ntHS	cWW
15	IL_4YAZ_006	4YAZ	0.2912	0	Triple sheared	R	Cyclic di-GMP-I riboswitch	G	35	G	36	G	37	C	38	G	39	*	U	16	A	17	A	18	A	19	C	20	cWW	tSH		ntHS	cWW
16	IL_3MXH_002	3MXH	0.3067	0	Triple sheared	R	c-di-GMP riboswitch	G	41	G	42	A	43	C	44	G	45	*	C	22	A	23	A	24	A	25	C	26	cWW	tSH		ntHS	cWW
17	IL_3IWN_002	3IWN	0.3271	0	Triple sheared	A	C-di-GMP riboswitch	G	31	G	32	A	33	C	34	G	35	*	C	12	A	13	A	14	A	15	C	16	cWW	tSH		ntHS	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
UGGAG*UGAAG	4
CGGAG*CGAAG	2
GGACG*CAAAC	2
UGGAA*UGAAG	1
UGGAG*UGAGG	1
AGGAA*UGAAU	1
GGGAG*CGAAC	1
UGGAG*CGAAA	1
CGGAU*AGAAG	1
AGGAU*AGAAU	1
GGACG*CUAAC	1
GGGCG*UAAAC	1

Non-Watson-Crick part of the motif

Sequence	Counts
GGA*GAA	12
GAC*AAA	2
GGA*GAG	1
GAC*UAA	1
GGC*AAA	1

Release history

Release	3.91	3.92	3.93	3.94
Date	2024-12-04	2025-01-01	2025-01-29	2025-02-26
Status	New id, 2 parents	Exact match	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: Triple sheared (12)
Triple sheared (H) (5)
Basepair signature: cWW-tSH-tSH-tHS-cWW
Heat map statistics: Min 0.07 | Avg 0.30 | Max 0.57

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Coloring options: Nucleotide numbers

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