Motif IL_51265.1 Version IL_51265.1 of this group appears in releases 3.2 to 3.76

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name		1		2		3		4		5		6	break		7		8		9		10	1-10	2-9	4-9	5-8	6-7
1	IL_1E7K_001	1E7K	0.3190	1	Kink-turn from U4	C	RNA (22-mer)	C	28	A	29	A	30	G	32	A	33	G	34	*	C	42	G	43	A	44	G	45	cWW	ntsS	tSH	tHS	cWW
2	IL_2OZB_002	2OZB	0.2187	1	Kink-turn from U4	C	RNA comprising the 5' Stem-Loop RNA of U4snRNA	C	28	A	29	A	30	G	32	A	33	G	34	*	C	42	G	43	A	44	G	45	cWW	tsS	tSH	tHS	cWW
3	IL_4LCK_006	4LCK	0.2267	1	Kink-turn from T-box riboswitch	F	T-BOX RIBOSWITCH STEM I	C	6	G	7	A	8	G	10	A	11	G	12	*	C	94	G	95	A	96	G	97	cWW	ntsS	ntSH	ntHS	cWW
4	IL_3SIV_001	3SIV	0.0945	1	Kink-turn from U4	C+F	U4atac snRNA	C	33	A	34	A	35	G	37	A	38	G	39	*	U	47	G	48	A	49	G	50	cWW	ntsS	tSH	tHS	cWW
5	IL_3SIU_002	3SIU	0.0000	1	Kink-turn from U4	F	U4atac snRNA	C	33	A	34	A	35	G	37	A	38	G	39	*	U	47	G	48	A	49	G	50	cWW	ntsS	tSH	tHS	cWW
6	IL_3SIV_003	3SIV	0.0801	1	Kink-turn from U4	F+C	U4atac snRNA	C	33	A	34	A	35	G	37	A	38	G	39	*	U	47	G	48	A	49	G	50	cWW	ntsS	tSH	tHS	ncWW

3D structures

Complete motif including flanking bases

Sequence	Counts
CAAUGAG*UGAG	3
CAAUGAG*CGAG	2
CGAUGAG*CGAG	1

Non-Watson-Crick part of the motif

Sequence	Counts
AAUGA*GA	5
GAUGA*GA	1

Release history

Release	3.3	3.4	3.5	3.6	3.7	3.8	3.9	3.10	3.2	3.11	3.12	3.13	3.14	3.15	3.16	3.17	3.18	3.19	3.20	3.21	3.22	3.23	3.24	3.25	3.26	3.27	3.28	3.29	3.30	3.31	3.32	3.33	3.34	3.35	3.36	3.37	3.38	3.39	3.40	3.41	3.42	3.43	3.44	3.45	3.46	3.47	3.48	3.49	3.50	3.51	3.52	3.53	3.54	3.55	3.56	3.57	3.58	3.59	3.60	3.61	3.62	3.63	3.64	3.65	3.66	3.67	3.68	3.69	3.70	3.71	3.72	3.73	3.74	3.75	3.76
Date	2018-03-08	2018-04-06	2018-05-04	2018-06-01	2018-06-29	2018-07-27	2018-08-24	2018-09-21	2018-09-26	2018-10-19	2018-11-16	2018-12-14	2019-01-11	2019-02-08	2019-03-08	2019-04-05	2019-05-03	2019-05-31	2019-06-28	2019-07-26	2019-08-23	2019-09-19	2019-10-16	2019-11-13	2019-12-11	2020-01-08	2020-02-05	2020-03-04	2020-04-01	2020-04-29	2020-05-27	2020-06-24	2020-07-22	2020-08-19	2020-09-16	2020-10-14	2020-11-11	2020-12-09	2021-01-06	2021-02-03	2021-03-03	2021-03-31	2021-04-28	2021-05-26	2021-06-23	2021-07-21	2021-08-18	2021-09-15	2021-10-13	2021-11-10	2021-12-08	2022-01-05	2022-02-02	2022-03-02	2022-03-30	2022-04-27	2022-05-25	2022-06-22	2022-07-20	2022-08-17	2022-10-12	2022-11-09	2022-12-07	2023-01-04	2023-02-01	2023-03-01	2023-03-29	2023-04-26	2023-05-24	2023-06-21	2023-07-19	2023-08-16	2023-09-13	2023-10-11	2023-11-08
Status	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	New id, no parents	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: Kink-turn from U4 (5)
Kink-turn from T-box riboswitch (1)
Basepair signature: cWW-tSS-L-tSH-tHS-cWW
Heat map statistics: Min 0.08 | Avg 0.18 | Max 0.33

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Coloring options: Nucleotide numbers

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