Motif IL_51880.1 Version IL_51880.1 of this group appears in releases 3.88 to 3.88
#S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | break | 8 | 9 | 10 | 11 | 12 | 1-12 | 2-11 | 4-11 | 5-10 | 6-9 | 7-8 | ||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | IL_4V9F_004 | 4V9F | 0.3454 | 1 | Kink-turn | 0 | LSU rRNA | C | 93 | G | 94 | A | 95 | G | 97 | A | 98 | A | 99 | C | 100 | * | G | 77 | G | 78 | G | 79 | A | 80 | G | 81 | cWW | ntsS | tSH | ntHS | tHS | cWW |
2 | IL_4AOB_002 | 4AOB | 0.2400 | 1 | Kink-turn | A | SAM-I riboswitch | U | 31 | G | 32 | A | 33 | G | 35 | A | 36 | C | 37 | C | 38 | * | G | 17 | C | 18 | A | 19 | A | 20 | G | 21 | cWW | tsS | tSH | cBW | cWW | |
3 | IL_7A0S_004 | 7A0S | 0.0000 | 1 | Kink-turn | X | LSU rRNA | C | 96 | U | 97 | U | 98 | G | 100 | A | 101 | C | 102 | U | 103 | * | A | 80 | C | 81 | G | 82 | A | 83 | G | 84 | cWW | ntSH | cBW | cWW | ||
4 | IL_4WF9_004 | 4WF9 | 0.2067 | 1 | Kink-turn | X | LSU rRNA | C | 97 | U | 98 | U | 99 | G | 101 | A | 102 | U | 103 | C | 104 | * | G | 81 | G | 82 | G | 83 | A | 84 | G | 85 | cWW | ntsS | ntSH | ntSs | tHS | cWW |
5 | IL_4V9F_031 | 4V9F | 0.3382 | 2 | Kink-turn | 0 | LSU rRNA | U | 1026 | G | 1027 | U | 1028 | G | 1031 | A | 1032 | C | 1033 | G | 1034 | * | C | 936 | C | 937 | G | 938 | A | 939 | G | 940 | cWW | ntsS | tSH | cBW | cWW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
CGAAGAAC*GGGAG | 1 |
UGAUGACC*GCAAG | 1 |
CUUUGACU*ACGAG | 1 |
CUUUGAUC*GGGAG | 1 |
UGUUUGACG*CCGAG | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
GAAGAA*GGA | 1 |
GAUGAC*CAA | 1 |
UUUGAC*CGA | 1 |
UUUGAU*GGA | 1 |
GUUUGAC*CGA | 1 |
Release history
Release | 3.88 |
---|---|
Date | 2024-09-11 |
Status | New id, 2 parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Kink-turn (5)
- Basepair signature
- cWW-tSS-tSH-L-R-R-L-cWW-L
- Heat map statistics
- Min 0.21 | Avg 0.26 | Max 0.43
Coloring options: