Motif IL_52173.1 Version IL_52173.1 of this group appears in releases 0.6 to 1.14
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 8 | 9 | 1-9 | 2-8 | 4-5 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_1U6B_004 | 1U6B | 0.8771 | 0 | B | 197-MER | G | 119 | A | 120 | A | 121 | G | 122 | * | C | 96 | A | 97 | A | 98 | G | 99 | C | 100 | cWW | cWW | cWW | |
| 2 | IL_1J2B_001 | 1J2B | 0.0000 | 0 | C | tRNA(Val) | C | 926 | G | 927 | C | 928 | C | 929 | * | G | 943 | G | 944 | A | 945 | G | 946 | G | 947 | cWW | cWW | ||
| 3 | IL_1MFQ_001 | 1MFQ | 0.8216 | 0 | A | SRP RNA | U | 117 | A | 118 | A | 119 | G | 120 | * | C | 230 | A | 231 | G | 232 | U | 233 | A | 234 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GAAG*CAAGC | 1 |
| CGCC*GGAGG | 1 |
| UAAG*CAGUA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AA*AAG | 1 |
| GC*GAG | 1 |
| AA*AGU | 1 |
Release history
| Release | 0.6 | 0.7 | 0.8 | 0.9 | 0.10 | 0.11 | 0.12 | 1.0 | 1.1 | 1.2 | 1.3 | 1.4 | 1.5 | 1.6 | 1.7 | 1.8 | 1.9 | 1.10 | 1.11 | 1.12 | 1.13 | 1.14 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2012-04-02 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-03-04 | 2013-04-08 | 2013-05-04 | 2013-06-01 | 2013-07-01 | 2013-08-03 | 2013-08-31 | 2013-09-28 | 2013-11-05 | 2013-12-07 | 2014-01-04 | 2014-02-01 | 2014-03-01 | 2014-03-29 | 2014-04-27 |
| Status | New id, 2 parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
| Parent motif | Common motif instances | Only in IL_52173.1 | Only in the parent motif |
|---|---|---|---|
| IL_76795.1 Compare | IL_1MFQ_001, IL_1J2B_001 | IL_1U6B_004 | IL_3O30_085, IL_3O30_054 |
| IL_62873.1 Compare | IL_1U6B_004 | IL_1MFQ_001, IL_1J2B_001 | IL_3BNQ_008, IL_1Y0Q_002, IL_2XZM_039, IL_3BNT_005, IL_3BNT_002, IL_3BNQ_002, IL_3O58_027 |
Children motifs
| Child motif | Common motif instances | Only in IL_52173.1 | Only in the child motif |
|---|---|---|---|
| IL_14901.1 Compare | IL_1J2B_001 | IL_1MFQ_001, IL_1U6B_004 | IL_4A1B_029 |
| IL_00734.1 Compare | IL_1MFQ_001 | IL_1U6B_004, IL_1J2B_001 | IL_3KTW_003 |
| IL_38328.1 Compare | IL_1U6B_004 | IL_1MFQ_001, IL_1J2B_001 | IL_1Y0Q_002, IL_3CUN_001 |
- Annotations
- Basepair signature
- cWW-L-R-R-R-L-cWW
- Heat map statistics
- Min 0.82 | Avg 0.60 | Max 0.98
Coloring options: