Motif IL_52583.1 Version IL_52583.1 of this group appears in releases 3.2 to 3.2
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | break | 4 | 5 | 6 | 7 | 8 | 1-5 | 1-8 | 2-5 | 2-7 | 3-4 | 3-6 | 3-7 | 5-7 | 6-7 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4V9F_084 | 4V9F | 0.2166 | 0 | Major groove minor groove platform with extra cWW | 0 | LSU rRNA | G | 2494 | U | 2495 | C | 2496 | * | G | 2524 | G | 2525 | C | 2526 | U | 2527 | U | 2528 | cWW | cwW | cWW | cSH | |||||
| 2 | IL_4IOA_088 | 4IOA | 0.1393 | 0 | Major groove minor groove platform with extra cWW (H) | X | LSU rRNA | A | 2438 | U | 2439 | C | 2440 | * | G | 2468 | G | 2469 | U | 2470 | U | 2471 | U | 2472 | cWW | cwW | cWW | cSH | |||||
| 3 | IL_4WF9_092 | 4WF9 | 0.0000 | 0 | Major groove minor groove platform with extra cWW | X | LSU rRNA | A | 2486 | U | 2487 | C | 2488 | * | G | 2516 | G | 2517 | U | 2518 | U | 2519 | U | 2520 | cWW | cwW | cWW | cSH | |||||
| 4 | IL_5J7L_337 | 5J7L | 0.2867 | 0 | Major groove minor groove platform with extra cWW | DA | LSU rRNA | A | 2459 | U | 2460 | A | 2461 | * | U | 2489 | G | 2490 | U | 2491 | U | 2492 | U | 2493 | cWW | cwW | cWW | cSH | |||||
| 5 | IL_2OEU_001 | 2OEU | 0.6984 | 0 | A+B | Hammerhead Ribozyme + RNA (20-mer) | A | 3 | U | 4 | G | 5 | * | C | 14 | C | 15 | A | 16 | A | 17 | U | 18 | cWW | cWW | cWW | |||||||
| 6 | IL_4WF9_012 | 4WF9 | 0.6366 | 0 | Major groove minor groove platform with extra cWW | X | LSU rRNA | G | 304 | A | 305 | C | 306 | * | G | 409 | G | 410 | A | 411 | U | 412 | C | 413 | ncBW | ncWW | cWW | ncSW | |||||
| 7 | IL_4V5O_149 | 4V5O | 0.7026 | 2 | BA | SSU rRNA | A | 1317 | A | 1320 | G | 1321 | * | C | 1346 | U | 1347 | U | 1348 | C | 1349 | U | 1350 | cWW | ncWW | cWW | ncSW | ncSH | |||||
| 8 | IL_5CZZ_001 | 5CZZ | 0.9337 | 0 | B | RNA (73-MER) | A | 29 | C | 30 | U | 31 | * | A | 42 | A | 43 | U | 44 | C | 45 | U | 46 | cWW | cWWa | ncWw | cWW | ncSH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| AUC*GGUUU | 2 |
| GUC*GGCUU | 1 |
| AUA*UGUUU | 1 |
| AUG*CCAAU | 1 |
| GAC*GGAUC | 1 |
| ACUAG*CUUCU | 1 |
| ACU*AAUCU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| U*GUU | 3 |
| U*GCU | 1 |
| U*CAA | 1 |
| A*GAU | 1 |
| CUA*UUC | 1 |
| C*AUC | 1 |
Release history
| Release | 3.2 |
|---|---|
| Date | 2018-09-26 |
| Status | New id, no parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Major groove minor groove platform with extra cWW (4)
- (3)
- Major groove minor groove platform with extra cWW (H) (1)
- Basepair signature
- cWW-cWW-cSH-R-cWW
- Heat map statistics
- Min 0.14 | Avg 0.58 | Max 0.99
Coloring options: