Motif IL_53229.1 Version IL_53229.1 of this group appears in releases 0.3 to 0.3
#S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | break | 3 | 4 | 5 | 6 | 7 | 1-4 | 1-7 | 2-3 | 2-5 | 2-6 | 4-6 | |||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | IL_2QBZ_001 | 2QBZ | 0.0000 | 1 | X | M-Box RNA, ykoK riboswitch aptamer | C | 21 | G | 22 | * | C | 163 | G | 164 | A | 165 | U | 167 | G | 168 | cWW | cWW | |||||
2 | IL_1S72_091 | 1S72 | 1.1768 | 1 | C-loop (H) | 0 | LSU rRNA | A | 2761 | G | 2763 | * | C | 2717 | C | 2718 | A | 2719 | C | 2720 | U | 2721 | tHW | cWW | cWW | cSW | cSH | |
3 | IL_3F1H_101 | 3F1H | 1.3545 | 1 | A | 23S RRNA | A | 2725 | G | 2727 | * | C | 2680 | C | 2681 | U | 2682 | C | 2683 | U | 2684 | ntHH | cWW | cWW | tSH | cSW | ||
4 | IL_1S72_051 | 1S72 | 1.2701 | 1 | C-loop (H) | 0 | LSU rRNA | A | 1437 | C | 1439 | * | G | 1425 | C | 1426 | A | 1427 | C | 1428 | U | 1429 | tHW | cWW | cWW | cSW | cSH |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
CG*CGAUUG | 1 |
ACG*CCACU | 1 |
CCUCU*AUG | 1 |
AGC*GCACU | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
*GAUU | 1 |
C*CAC | 1 |
CUC*U | 1 |
G*CAC | 1 |
Release history
Release | 0.3 |
---|---|
Date | 2011-12-08 |
Status | New id, 2 parents |
Parent motifs
Parent motif | Common motif instances | Only in IL_53229.1 | Only in the parent motif |
---|---|---|---|
IL_47950.2 Compare | IL_1S72_091, IL_3F1H_101, IL_1S72_051 | IL_2QBZ_001 | IL_2ZJR_047, IL_1FJG_015, IL_1FJG_013, IL_2ZJR_096, IL_3F1H_049, IL_1FJG_047 |
IL_08744.1 Compare | IL_2QBZ_001 | IL_1S72_091, IL_3F1H_101, IL_1S72_051 |
Children motifs
Child motif | Common motif instances | Only in IL_53229.1 | Only in the child motif |
---|---|---|---|
IL_36906.1 Compare | IL_1S72_091, IL_3F1H_101 | IL_2QBZ_001, IL_1S72_051 | IL_1FJG_015, IL_2ZJR_096, IL_1FJG_047 |
IL_14789.1 Compare | IL_2QBZ_001 | IL_1S72_091, IL_3F1H_101, IL_1S72_051 | |
IL_45778.1 Compare | IL_1S72_051 | IL_1S72_091, IL_2QBZ_001, IL_3F1H_101 | IL_3F1H_049, IL_2ZJR_047, IL_1FJG_013 |
- Annotations
-
- C-loop (H) (2)
- (2)
- Basepair signature
- Heat map statistics
- Min 0.30 | Avg 0.64 | Max 1.35
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