Motif IL_53596.1 Version IL_53596.1 of this group appears in releases 3.95 to 3.99
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | break | 8 | 9 | 1-9 | 7-8 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_6PMO_001 | 6PMO | 0.0000 | 2 | A | T-box leader | G | 159 | U | 160 | G | 161 | G | 162 | A | 163 | C | 166 | G | 167 | * | U | 185 | C | 186 | cWW | cWW |
| 2 | IL_6UFH_003 | 6UFH | 0.1206 | 2 | A | RNA (167-MER) | G | 125 | U | 126 | G | 127 | G | 128 | C | 129 | C | 132 | G | 133 | * | U | 161 | C | 162 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GUGGAACCG*UC | 1 |
| GUGGCACCG*UC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UGGAACC* | 1 |
| UGGCACC* | 1 |
- Annotations
-
- (2)
- Basepair signature
- cWW-L-cWW-L-L-R-L
- Heat map statistics
- Min 0.12 | Avg 0.06 | Max 0.12
Coloring options: