Motif IL_53635.4 Version IL_53635.4 of this group appears in releases 1.14 to 1.14
#S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 8 | 9 | 10 | 11 | 1-11 | 2-9 | 3-8 | 4-7 | 5-6 | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | IL_1S72_025 | 1S72 | 0.2133 | 2 | 0 | LSU rRNA | G | 765 | A | 766 | A | 767 | U | 768 | C | 769 | * | G | 892 | C | 893 | A | 895 | C | 896 | A | 897 | C | 899 | cWW | tHW | tHW | cWW | ||
2 | IL_2QBG_021 | 2QBG | 0.1471 | 2 | B | 23S rRNA | G | 674 | A | 675 | A | 676 | A | 677 | C | 678 | * | G | 799 | A | 800 | A | 802 | U | 803 | A | 804 | C | 806 | cWW | tHW | tHW | tWW | cWW | |
3 | IL_4NVV_020 | 4NVV | 0.1421 | 2 | A | 23S Ribosomal RNA | G | 721 | A | 722 | A | 723 | A | 724 | C | 725 | * | G | 846 | A | 847 | A | 849 | U | 850 | A | 851 | C | 853 | cWW | tHW | tHW | ntWW | cWW | |
4 | IL_1VW3_017 | 1VW3 | 0.0000 | 2 | A | 21S ribosomal RNA | G | 583 | A | 584 | A | 585 | A | 586 | G | 587 | * | C | 690 | A | 691 | A | 693 | U | 694 | A | 695 | C | 697 | cWW | tHW | tHW | tWW | cWW | |
5 | IL_4A1B_035 | 4A1B | 0.1745 | 2 | 1 | 26S RRNA | G | 830 | A | 831 | A | 832 | A | 833 | G | 834 | * | C | 956 | U | 957 | G | 959 | U | 960 | A | 961 | C | 963 | cWW | tHW | ncHH | cWW | ||
6 | IL_3U5H_029 | 3U5H | 0.3299 | 2 | 5 | 25S rRNA | G | 805 | A | 806 | A | 807 | A | 808 | G | 809 | * | C | 931 | U | 932 | G | 934 | U | 935 | A | 936 | C | 938 | cWW | tHW | ntHH | cWW | ||
7 | IL_4IOA_014 | 4IOA | 0.3217 | 2 | tHW-tHW cross-strand stack | X | LSU rRNA | G | 687 | A | 688 | A | 689 | A | 690 | C | 691 | * | G | 812 | A | 813 | A | 815 | U | 816 | A | 817 | C | 819 | cWW | tHW | ntWW | tWW | cWW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
GAAAC*GAGAUAGC | 3 |
GAAAG*CUAGUAGC | 2 |
GAAUC*GCAACAGC | 1 |
GAAAG*CAGAUAGC | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
AAA*AGAUAG | 4 |
AAA*UAGUAG | 2 |
AAU*CAACAG | 1 |
Release history
Release | 1.14 |
---|---|
Date | 2014-04-27 |
Status | Updated, 1 parent |
Parent motifs
Parent motif | Common motif instances | Only in IL_53635.4 | Only in the parent motif |
---|---|---|---|
IL_53635.3 Compare | IL_1S72_025, IL_3U5H_029, IL_4A1B_035, IL_2QBG_021, IL_4IOA_014 | IL_4NVV_020, IL_1VW3_017 | IL_3V2F_018 |
Children motifs
Child motif | Common motif instances | Only in IL_53635.4 | Only in the child motif |
---|---|---|---|
IL_53635.5 Compare | IL_2QBG_021, IL_1S72_025, IL_4A1B_035, IL_4NVV_020, IL_4IOA_014, IL_3U5H_029, IL_1VW3_017 | IL_4CUV_033 |
- Annotations
-
- (6)
- tHW-tHW cross-strand stack (1)
- Basepair signature
- cWW-R-tHW-tHW-tWW-cWW
- Heat map statistics
- Min 0.09 | Avg 0.23 | Max 0.37
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