#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3 4 5break 6 7 8 9 10 111-112-93-84-75-6
1 IL_1S72_0251S720.213320 LSU rRNAG765A766A767U768C769*G892C893A895C896A897C899cWWtHWtHWcWW
2 IL_2QBG_0212QBG0.14712B23S rRNAG674A675A676A677C678*G799A800A802U803A804C806cWWtHWtHWtWWcWW
3 IL_4NVV_0204NVV0.14212A23S Ribosomal RNAG721A722A723A724C725*G846A847A849U850A851C853cWWtHWtHWntWWcWW
4 IL_1VW3_0171VW30.00002A21S ribosomal RNAG583A584A585A586G587*C690A691A693U694A695C697cWWtHWtHWtWWcWW
5 IL_4A1B_0354A1B0.17452126S RRNAG830A831A832A833G834*C956U957G959U960A961C963cWWtHWncHHcWW
6 IL_3U5H_0293U5H0.32992525S rRNAG805A806A807A808G809*C931U932G934U935A936C938cWWtHWntHHcWW
7 IL_4IOA_0144IOA0.32172tHW-tHW cross-strand stackX LSU rRNAG687A688A689A690C691*G812A813A815U816A817C819cWWtHWntWWtWWcWW

3D structures

Complete motif including flanking bases
SequenceCounts
GAAAC*GAGAUAGC3
GAAAG*CUAGUAGC2
GAAUC*GCAACAGC1
GAAAG*CAGAUAGC1
Non-Watson-Crick part of the motif
SequenceCounts
AAA*AGAUAG4
AAA*UAGUAG2
AAU*CAACAG1

Release history

Release1.14
Date2014-04-27
StatusUpdated, 1 parent

Parent motifs

Parent motifCommon motif instancesOnly in IL_53635.4Only in the parent motif
IL_53635.3
Compare
IL_1S72_025, IL_3U5H_029, IL_4A1B_035, IL_2QBG_021, IL_4IOA_014IL_4NVV_020, IL_1VW3_017IL_3V2F_018

Children motifs

Child motifCommon motif instancesOnly in IL_53635.4Only in the child motif
IL_53635.5
Compare
IL_2QBG_021, IL_1S72_025, IL_4A1B_035, IL_4NVV_020, IL_4IOA_014, IL_3U5H_029, IL_1VW3_017IL_4CUV_033
Annotations
  • (6)
  • tHW-tHW cross-strand stack (1)
  • Basepair signature
    cWW-R-tHW-tHW-tWW-cWW
    Heat map statistics
    Min 0.09 | Avg 0.23 | Max 0.37
    Help

    Coloring options:

    Copyright 2025 BGSU RNA group. Page generated in 0.3936 s