Motif IL_53762.1 Version IL_53762.1 of this group appears in releases 3.80 to 3.89
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 13 | break | 14 | 15 | 16 | 17 | 18 | 19 | 20 | 21 | 22 | 23 | 24 | 1-24 | 2-23 | 3-22 | 12-15 | 13-14 | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_5TBW_052 | 5TBW | 0.0000 | 4 | 1 | LSU rRNA | U | 1299 | G | 1300 | A | 1301 | A | 1303 | A | 1304 | G | 1307 | A | 1308 | U | 1309 | G | 1310 | G | 1311 | C | 1312 | G | 1313 | C | 1314 | * | G | 1194 | A | 1195 | A | 1197 | C | 1198 | C | 1199 | A | 1200 | C | 1201 | A | 1202 | A | 1203 | A | 1204 | A | 1205 | cWW | tSH | tHH | cWW | cWW |
| 2 | IL_8C3A_055 | 8C3A | 0.0648 | 4 | 1 | LSU rRNA | U | 1295 | G | 1296 | A | 1297 | A | 1299 | A | 1300 | G | 1303 | A | 1304 | U | 1305 | G | 1306 | G | 1307 | C | 1308 | G | 1309 | C | 1310 | * | G | 1190 | A | 1191 | A | 1193 | C | 1194 | C | 1195 | A | 1196 | C | 1197 | A | 1198 | A | 1199 | A | 1200 | A | 1201 | cWW | tSH | tHH | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UGAAAAUGGAUGGCGC*GACACCACAAAA | 2 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GAAAAUGGAUGGCG*ACACCACAAA | 2 |
Release history
| Release | 3.80 | 3.81 | 3.82 | 3.83 | 3.84 | 3.85 | 3.86 | 3.87 | 3.88 | 3.89 |
|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2024-01-31 | 2024-02-28 | 2024-03-27 | 2024-04-24 | 2024-05-22 | 2024-06-19 | 2024-07-17 | 2024-08-14 | 2024-09-11 | 2024-10-09 |
| Status | New id, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (2)
- Basepair signature
- cWW-tSH-tHH-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-cWW-L
- Heat map statistics
- Min 0.06 | Avg 0.03 | Max 0.06
Coloring options: