Motif IL_53918.3 Version IL_53918.3 of this group appears in releases 0.4 to 0.4
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | break | 4 | 5 | 6 | 1-6 | 2-5 | 3-4 | 5-6 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_1S72_060 | 1S72 | 0.0000 | 0 | Isolated tWW turn (H) | 0 | LSU rRNA | U | 1741 | A | 1742 | G | 1743 | * | C | 2036 | C | 2037 | A | 2038 | cWW | tWW | cWW | |
| 2 | IL_2ZJR_061 | 2ZJR | 0.1681 | 0 | Isolated tWW turn (H) | X | LSU rRNA | U | 1680 | A | 1681 | A | 1682 | * | U | 1978 | C | 1979 | A | 1980 | cWW | tWW | cWW | |
| 3 | IL_1U9S_005 | 1U9S | 0.9759 | 0 | Minor groove platform, major groove intercalation | A | RNase P class A | A | 137 | G | 138 | C | 139 | * | G | 161 | G | 162 | C | 136 | ntHS | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UAG*CCA | 1 |
| UAA*UCA | 1 |
| GG*CAGC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| A*C | 2 |
| *AG | 1 |
Release history
| Release | 0.4 |
|---|---|
| Date | 2011-12-08 |
| Status | Updated, 2 parents |
Parent motifs
| Parent motif | Common motif instances | Only in IL_53918.3 | Only in the parent motif |
|---|---|---|---|
| IL_53918.2 Compare | IL_1S72_060, IL_2ZJR_061 | IL_1U9S_005 | IL_1NTB_003 |
| IL_17977.1 Compare | IL_1U9S_005 | IL_1S72_060, IL_2ZJR_061 | IL_1S03_003, IL_1S72_101, IL_1S03_007, IL_1U9S_004, IL_1FJG_025, IL_1U9S_002, IL_1S72_068, IL_1I6U_002, IL_1I6U_004, IL_2ZJR_069 |
Children motifs
| Child motif | Common motif instances | Only in IL_53918.3 | Only in the child motif |
|---|---|---|---|
| IL_23428.1 Compare | IL_1S72_060, IL_2ZJR_061 | IL_1U9S_005 | IL_3O58_093, IL_2QBG_063 |
| IL_79143.1 Compare | IL_1U9S_005 | IL_1S72_060, IL_2ZJR_061 | IL_3PYO_063, IL_1U9S_004, IL_1FJG_025, IL_1U9S_002, IL_2QBG_074, IL_1S72_068, IL_3O30_040, IL_2ZJR_069 |
- Annotations
-
- Isolated tWW turn (H) (2)
- Minor groove platform, major groove intercalation (1)
- Basepair signature
- Heat map statistics
- Min 0.17 | Avg 0.46 | Max 0.98
Coloring options: