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Motif IL_54697.2 Version IL_54697.2 of this group appears in releases 3.92 to 3.94

#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3 4break 5 6 7 81-82-62-73-64-5
1 IL_6DTD_0016DTD0.67370Tandem non-canonical cWW pairsCRNA (37-MER)A31A32A33C34*G5C6A7U8cWWcWwncWBcWW
2 IL_1L9A_0051L9A0.41330Tandem non-canonical cWW pairsBsignal recognition particle RNA S domainG156A157C158C159*G138A139C140C141cWWncWWancWWcWW
3 IL_4K27_0014K270.37020Tandem non-canonical cWW pairsUMyotonic Dystrophy Type 2 RNAC4C5U6G7*C49C50U51G52cWWcWWcWWcWW
4 IL_8P9A_4218P9A0.55380Tandem non-canonical cWW pairs (H)sR SSU rRNAG885U886A887U888*A924G925A926C927cWWcWWcWW
5 IL_8C3A_4398C3A0.57180Tandem non-canonical cWW pairsCM SSU rRNAG870U871A872U873*A909G910A911C912cWWcWWcWW
6 IL_8C3A_4378C3A0.51820Tandem non-canonical cWW pairsCM SSU rRNAG856G857U858C859*G938G939A940C941cWWcWWcWW
7 IL_8P9A_4198P9A0.48260Tandem non-canonical cWW pairs (H)sR SSU rRNAG871G872U873C874*G953G954A955C956cWWcWWcWW
8 IL_3CJZ_0013CJZ0.54770Tandem non-canonical cWW pairsA+BRNA (13-mer)G5M2G6A7C8*G18M2G19A20C21cWWcWWcWWcWW
9 IL_5LQO_0025LQO0.52150Tandem non-canonical cWW pairsA+BRNA (10-mer)G4G5A6C7*G4G5A6C7cWWcWWcWWcWW
10 IL_5LQT_0025LQT0.48830Tandem non-canonical cWW pairsA+BRNA (10-mer)G4G56MZ6C7*G4G56MZ6C7cWWcWWcWWcWW
11 IL_333D_001333D0.52140Tandem non-canonical cWW pairsARNA (8-mer)C3A4I5G6*C3||||11_655A4||||11_655I5||||11_655G6||||11_655cWWcWWcWWcWW
12 IL_8P9A_4268P9A0.57680Tandem non-canonical cWW pairs (H)sR SSU rRNAG1041G1042A1043U1044*G1074C1075A1076C1077cWWcWWncWBcWW
13 IL_8C3A_4448C3A0.57400Tandem non-canonical cWW pairsCM SSU rRNAG1026G1027A1028U1029*G1059C1060A1061C1062cWWcWWncWWacWW
14 IL_5J7L_2835J7L0.49690Tandem non-canonical cWW pairsDA LSU rRNAG1038A1039A1040G1041*C1114G1115G1116C1117cWWcWWcWWcWW
15 IL_8P9A_3278P9A0.51860Tandem non-canonical cWW pairs (H)AR LSU rRNAU2718U2719G2720A2721*U2735A2736C2737A2738cWWcWWcWW
16 IL_7R9G_0027R9G0.43810Tandem non-canonical cWW pairsBRNA (18-mer)C5G6G7G8*C5||||2_555G6||||2_555G7||||2_555G8||||2_555ncWWncWW
17 IL_8P9A_4208P9A0.52591Tandem non-canonical cWW pairs (H)sR SSU rRNAC950A951A952G953*C874G875G877G878cWWcWWcWWcWW
18 IL_8C3A_4388C3A0.51191Tandem non-canonical cWW pairsCM SSU rRNAC935A936A937G938*C859G860G862G863cWWcWWcWWcWW
19 IL_1MFQ_0041MFQ0.32780Tandem non-canonical cWW pairsA SRP RNAG138A139C140C141*G156A157C158C159cWWncWWncWWcWW
20 IL_1JID_0021JID0.36930Tandem non-canonical cWW pairsBHELIX 6 OF HUMAN SRP RNAG138A139C140C141*G156A157C158C159cWWcWWcWWcWW
21 IL_3WBM_0033WBM0.31690Tandem non-canonical cWW pairsY+XRNA (25-MER)A10C11C12C13*G14A15C16U17cWWncWBcWWcWW
22 IL_3WBM_0023WBM0.37160Tandem non-canonical cWW pairsX+YRNA (25-MER)A10C11C12C13*G14A15C16U17cWWncWBncWWcWW
23 IL_4EYA_0104EYA0.45420Tandem non-canonical cWW pairsm+nRNA (12-mer)C6U7U8G9*C6U7U8G9cWWncwWncwWncWW
24 IL_8P9A_4508P9A0.38600Tandem non-canonical cWW pairs (H)sR SSU rRNAC1509U1510U1511G1512*C1495U1496U1497G1498cWWcWwcWW
25 IL_7LYF_0017LYF0.36251Isolated cWH basepair with non-canonical cWWA tRNAA90G91U93C94*G39U40C41U42cWWncHWncWwcWW
26 IL_7A0S_0407A0S0.28320Tandem non-canonical cWW pairsX LSU rRNAG1196U1197C1198U1199*A1175U1176U1177C1178cWWncwWcWWcWW
27 IL_3TZR_0033TZR0.29440Tandem non-canonical cWW pairsB+ARNA (16-mer)G102U103C104G105*C62U63U64C65cWWcwWcWWcWW
28 IL_2PN3_0042PN30.31960Tandem non-canonical cWW pairsB+ARNA (20-mer)G102U103C104G105*C62U63U64C65cWWcwWcWWcWW
29 IL_8P9A_3568P9A0.29760Tandem non-canonical cWW pairs (H)AR LSU rRNAU3300U3301U3302G3303*C3311U3312U3313A3314cWWcwWcWwcWW
30 IL_205D_001205D0.31830Tandem non-canonical cWW pairsA+BRNA (12-mer)U5U6U7G8*U17U18U19G20cWWcwWcWwcWW
31 IL_4EYA_0034EYA0.27090Tandem non-canonical cWW pairse+fRNA (12-mer)C6U7U8G9*C6U7U8G9cWWcwWcWwcWW
32 IL_8C3A_4798C3A0.24790Tandem non-canonical cWW pairsCM SSU rRNAC1662U1663C1664C1665*G1710C1711U1712G1713cWWcwWncwWcWW
33 IL_8ID2_0018ID20.21850Tandem non-canonical cWW pairsCRNA (24-mer)C17U18U19U20*A5C6U7G8cWWncWWcwWcWWcWW
34 IL_3R2D_0023R2D0.23740Tandem non-canonical cWW pairsR+SRNA (12-mer)C6U7U8G9*C6U7U8G9cWWcwWcWwcWW
35 IL_6MWN_0056MWN0.25000Tandem non-canonical cWW pairsB IRESA643U644U645G646*C661U662U663U664cWWcwWcWwcWW
36 IL_8P9A_3558P9A0.26570Tandem non-canonical cWW pairs (H)AR LSU rRNAC3235U3236U3237G3238*C3249U3250U3251G3252cWWcwWcWwcWW
37 IL_280D_001280D0.28950Tandem non-canonical cWW pairsB+ARNA (12-mer)C17U18U19G20*C5U6U7G8cWWcwWcWwcWW
38 IL_4UYK_0034UYK0.23590Tandem non-canonical cWW pairsRSRP RNAG117U118U119C120*G81U82U83C84cWWcwWcWwcWW
39 IL_8HNT_0018HNT0.28310Tandem non-canonical cWW pairsBsgRNAG54U55U56G57*C32U33C34C35cWWncSWcWwcWW
40 IL_8UIW_0028UIW0.26550NyjdF RNA (R. gauvreauii)C100U101U102C103*G112U113C114G115cWWcWwcWW
41 IL_8P9A_4628P9A0.26760Tandem non-canonical cWW pairs (H)sR SSU rRNAU1723U1724U1725G1726*C1675U1676C1677A1678cWWcWwcWW
42 IL_8P9A_2698P9A0.24640Tandem non-canonical cWW pairs (H)AR LSU rRNAA1006U1007U1008A1009*U1041U1042C1043U1044cWWcWwcWW
43 IL_8P9A_3808P9A0.33900Tandem non-canonical cWW pairs (H)sR SSU rRNAG109U110U111A112*U302U303U304C305cWWcwWcWwcWW
44 IL_8C3A_3998C3A0.32310Tandem non-canonical cWW pairsCM SSU rRNAG109U110U111A112*U300U301U302C303cWWcwWcWwcWW
45 IL_402D_001402D0.23320Tandem non-canonical cWW pairsA+BRNA (8-mer)C103C104A105G106*C111C112A113G114cWWcWWcWWcWW
46 IL_5C5W_0015C5W0.00000Tandem non-canonical cWW pairsARNA (19-mer)C2C3U4G5*C15||||5_556U16||||5_556A17||||5_556G18||||5_556cWWcWWcWwcWW
47 IL_8P9A_4118P9A0.30520Tandem non-canonical cWW pairs (H)sR SSU rRNAC726U727U728G729*C709U710U711G712ncWWcwWcWwcWW
48 IL_4XW1_0024XW10.31360Tandem non-canonical cWW pairsCRNA (9-mer)C2C3U4LCG5*C2||||7_555C3||||7_555U4||||7_555LCG5||||7_555cWWcWWcWWcWW
49 IL_4XW0_0024XW00.31310Tandem non-canonical cWW pairsB+ARNA (10-mer)C2C3U4LCG5*C2C3U4LCG5cWWcWWcWWcWW
50 IL_4K27_0034K270.39490Tandem non-canonical cWW pairsUMyotonic Dystrophy Type 2 RNAC41C42U43G44*C12C13U14G15cWWcWWcWWcWW
51 IL_4K27_0024K270.40710Tandem non-canonical cWW pairsUMyotonic Dystrophy Type 2 RNAC45C46U47G48*C8C9U10G11cWWcWWcWWcWW

3D structures

Complete motif including flanking bases
SequenceCounts
CUUG*CUUG7
GACC*GACC3
CCUG*CCUG3
GUAU*AGAC2
GGUC*GGAC2
GGAU*GCAC2
CAAG*CGGGG2
ACCC*GACU2
GUCG*CUUC2
GUUA*UUUC2
CCU(LCG)*CCU(LCG)2
AAAC*GCAU1
GAC*GAC1
GGAC*GGAC1
GGC*GGC1
CA(I)G*CA(I)G1
GAAG*CGGC1
UUGA*UACA1
CGGG*CGGG1
AGUUC*GUCU1
GUCU*AUUC1
UUUG*CUUA1
UUUG*UUUG1
CUCC*GCUG1
CUUU*ACUG1
AUUG*CUUU1
GUUC*GUUC1
GUUG*CUCC1
CUUC*GUCG1
UUUG*CUCA1
AUUA*UUCU1
CCAG*CCAG1
CCUG*CUAG1
Non-Watson-Crick part of the motif
SequenceCounts
UU*UU13
CU*CU5
UU*UC4
AC*AC3
UC*UU3
UA*GA2
GU*GA2
GA*CA2
AA*GGG2
CC*AC2
AA*CA1
(M2G)A*(M2G)A1
GA*GA1
G(6MZ)*G(6MZ)1
A(I)*A(I)1
AA*GG1
UG*AC1
GG*GG1
GUU*UC1
UC*CU1
UU*CU1
CA*CA1
CU*UA1

Release history

Release3.923.933.94
Date2025-01-012025-01-292025-02-26
StatusUpdated, 1 parentExact matchExact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • Tandem non-canonical cWW pairs (37)
  • Tandem non-canonical cWW pairs (H) (12)
  • Isolated cWH basepair with non-canonical cWW (1)
  • (1)
    • Basepair signature
    cWW-cWW-cWW-cWW
    Heat map statistics
    Min 0.05 | Avg 0.45 | Max 0.85
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