Motif IL_54826.1 Version IL_54826.1 of this group appears in releases 0.4 to 0.4
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | break | 7 | 8 | 9 | 10 | 11 | 12 | 1-12 | 2-10 | 2-11 | 4-9 | 5-8 | 6-7 | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_1S72_057 | 1S72 | 0.0000 | 1 | 0 | LSU rRNA | C | 1578 | C | 1579 | A | 1580 | A | 1581 | C | 1582 | U | 1583 | * | A | 1612 | C | 1613 | G | 1614 | A | 1615 | A | 1616 | G | 1618 | cWW | ntWH | tHS | ncBW | cWW | |
| 2 | IL_3B5F_001 | 3B5F | 0.9205 | 0 | A+B | Loop A Substrate strand + 29-mer Loop A and Loop B Ribozyme strand | C | 4 | A | 5 | G | 6 | U | 7 | C | 8 | C | 9 | * | G | 6 | A | 7 | G | 8 | A | 9 | A | 10 | G | 11 | cWW | tSH | tHS | ncWWa | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CCAACU*ACGAACG | 1 |
| CAGUCC*GAGAAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CAAC*CGAAC | 1 |
| AGUC*AGAA | 1 |
Release history
| Release | 0.4 |
|---|---|
| Date | 2011-12-08 |
| Status | New id, 2 parents |
Parent motifs
| Parent motif | Common motif instances | Only in IL_54826.1 | Only in the parent motif |
|---|---|---|---|
| IL_70290.1 Compare | IL_1S72_057 | IL_3B5F_001 | |
| IL_15373.1 Compare | IL_3B5F_001 | IL_1S72_057 | IL_1FJG_053 |
Children motifs
| Child motif | Common motif instances | Only in IL_54826.1 | Only in the child motif |
|---|---|---|---|
| IL_37987.1 Compare | IL_3B5F_001 | IL_1S72_057 | |
| IL_43113.1 Compare | IL_1S72_057 | IL_3B5F_001 | IL_3P49_012 |
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