Motif IL_55113.1 Version IL_55113.1 of this group appears in releases 0.1 to 0.4
#S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | break | 4 | 5 | 1-5 | 2-3 | 3-4 | |||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | IL_1S72_081 | 1S72 | 0.0000 | 0 | Major groove platform (H) | 0 | LSU rRNA | U | 2492 | C | 2493 | G | 2494 | * | U | 2528 | G | 2529 | cWW | cHH | cWW |
2 | IL_1S72_084 | 1S72 | 0.3637 | 0 | Major groove platform (H) | 0 | LSU rRNA | U | 2615 | G | 2616 | G | 2617 | * | C | 2542 | G | 2543 | cWW | nchH | cWW |
3 | IL_3F1H_093 | 3F1H | 0.4483 | 0 | A | 23S RRNA | U | 2580 | G | 2581 | G | 2582 | * | C | 2507 | G | 2508 | cWW | nchH | cWW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
UCG*UG | 1 |
UGG*CG | 1 |
CG*UGG | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
C* | 1 |
G* | 1 |
*G | 1 |
Release history
Release | 0.1 | 0.2 | 0.3 | 0.4 |
---|---|---|---|---|
Date | 2011-12-08 | 2011-12-08 | 2011-12-08 | 2011-12-08 |
Status | New id, no parents | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
Child motif | Common motif instances | Only in IL_55113.1 | Only in the child motif |
---|---|---|---|
IL_55113.2 Compare | IL_1S72_081, IL_1S72_084 | IL_3F1H_093 | IL_3PYO_084 |
- Annotations
-
- Major groove platform (H) (2)
- (1)
- Basepair signature
- Heat map statistics
- Min 0.14 | Avg 0.21 | Max 0.45
Coloring options: