Motif IL_55113.2 Version IL_55113.2 of this group appears in releases 0.5 to 0.5
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | break | 3 | 4 | 5 | 1-5 | 2-3 | 4-5 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_3PYO_084 | 3PYO | 0.0000 | 0 | A | 23S ribosomal RNA | C | 2507 | G | 2508 | * | U | 2580 | G | 2581 | G | 2582 | cWW | cWW | nchH | |
| 2 | IL_1S72_084 | 1S72 | 0.1468 | 0 | Major groove platform (H) | 0 | LSU rRNA | C | 2542 | G | 2543 | * | U | 2615 | G | 2616 | G | 2617 | cWW | cWW | nchH |
| 3 | IL_1S72_081 | 1S72 | 0.3941 | 0 | Major groove platform (H) | 0 | LSU rRNA | U | 2528 | G | 2529 | * | U | 2492 | C | 2493 | G | 2494 | cWW | cWW | cHH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CG*UGG | 2 |
| UG*UCG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| *G | 2 |
| *C | 1 |
Release history
| Release | 0.5 |
|---|---|
| Date | 2011-12-08 |
| Status | Updated, 1 parent |
Parent motifs
| Parent motif | Common motif instances | Only in IL_55113.2 | Only in the parent motif |
|---|---|---|---|
| IL_55113.1 Compare | IL_1S72_081, IL_1S72_084 | IL_3PYO_084 | IL_3F1H_093 |
Children motifs
| Child motif | Common motif instances | Only in IL_55113.2 | Only in the child motif |
|---|---|---|---|
| IL_11594.1 Compare | IL_1S72_081, IL_1S72_084 | IL_3PYO_084 | IL_3UXR_069, IL_3U5H_113 |
- Annotations
-
- Major groove platform (H) (2)
- (1)
- Basepair signature
- Heat map statistics
- Min 0.15 | Avg 0.20 | Max 0.39
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