Motif IL_55114.2 Version IL_55114.2 of this group appears in releases 1.15 to 1.15
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 8 | 1-8 | 2-7 | 3-6 | 3-7 | 4-5 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4CUX_062 | 4CUX | 0.8120 | 0 | 2 | 18S RRNA | A | 1234 | C | 1235 | A | 1236 | G | 1237 | * | C | 1248 | U | 1249 | U | 1250 | U | 1251 | ncWW | ncWW | cWW | ||
| 2 | IL_4NVV_045 | 4NVV | 0.6522 | 1 | A | 23S Ribosomal RNA | U | 1286 | A | 1287 | A | 1288 | G | 1289 | * | C | 1247 | G | 1248 | A | 1249 | G | 1251 | cWW | tHS | cWW | ||
| 3 | IL_2QBG_057 | 2QBG | 0.5159 | 1 | B | 23S rRNA | U | 1468 | A | 1469 | A | 1470 | G | 1471 | * | U | 1520 | G | 1521 | A | 1522 | G | 1524 | cWW | tHH | tHS | cWW | |
| 4 | IL_3BNP_003 | 3BNP | 0.0000 | 1 | B+A | A site of human mitochondrial ribosome, B chain | C | 5 | A | 6 | C | 7 | C | 8 | * | G | 14 | C | 15 | A | 16 | G | 18 | cWW | cWW | |||
| 5 | IL_3BNP_002 | 3BNP | 0.2549 | 1 | A+B | A site of human mitochondrial ribosome, A chain + A site of human mitochondrial ribosome, B chain | C | 6 | A | 7 | C | 8 | C | 9 | * | G | 13 | C | 14 | A | 15 | G | 17 | cWW | cWW | |||
| 6 | IL_3BNQ_005 | 3BNQ | 0.3606 | 1 | B+A | A site of human mitochondrial ribosome, A chain | C | 7 | A | 8 | C | 9 | C | 10 | * | G | 15 | C | 16 | A | 17 | G | 19 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CACC*GCAAG | 3 |
| ACAG*CUUU | 1 |
| UAAG*CGAUG | 1 |
| UAAG*UGAUG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AC*CAA | 3 |
| AA*GAU | 2 |
| CA*UU | 1 |
Release history
| Release | 1.15 |
|---|---|
| Date | 2014-06-20 |
| Status | Updated, 2 parents |
Parent motifs
| Parent motif | Common motif instances | Only in IL_55114.2 | Only in the parent motif |
|---|---|---|---|
| IL_55114.1 Compare | IL_3BNP_002, IL_2QBG_057, IL_4NVV_045, IL_3BNQ_005 | IL_4CUX_062, IL_3BNP_003 | |
| IL_09530.2 Compare | IL_3BNP_003 | IL_4CUX_062, IL_3BNP_002, IL_2QBG_057, IL_4NVV_045, IL_3BNQ_005 | IL_2GDI_004, IL_2GDI_008, IL_3D2V_003, IL_4LCK_005 |
Children motifs
| Child motif | Common motif instances | Only in IL_55114.2 | Only in the child motif |
|---|---|---|---|
| IL_55114.3 Compare | IL_3BNP_003, IL_3BNP_002, IL_3BNQ_005, IL_2QBG_057 | IL_4CUX_062, IL_4NVV_045 | IL_4QCN_042 |
| IL_32902.1 Compare | IL_4CUX_062 | IL_3BNP_002, IL_3BNP_003, IL_4NVV_045, IL_2QBG_057, IL_3BNQ_005 | IL_1VW3_042, IL_1CSL_001, IL_2QBG_055, IL_1DUQ_001, IL_1VX6_076, IL_3J7A_044, IL_2QBG_046 |
- Annotations
-
- (6)
- Basepair signature
- cWW-L-R-tHS-cWW
- Heat map statistics
- Min 0.15 | Avg 0.53 | Max 0.91
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