Motif IL_55625.1 Version IL_55625.1 of this group appears in releases 2.0 to 2.0
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | break | 4 | 5 | 1-5 | 3-4 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_1FJG_012 | 1FJG | 0.4088 | 1 | A | SSU rRNA | U | 249 | A | 250 | U | 252 | * | A | 274 | G | 275 | cWW | cWW |
| 2 | IL_3J7P_173 | 3J7P | 0.2236 | 3 | S2 | SSU rRNA | U | 366 | U | 367 | A | 371 | * | U | 393 | G | 394 | cWW | ncWW |
| 3 | IL_3J7A_017 | 3J7A | 0.0000 | 3 | A | SSU rRNA | U | 324 | U | 325 | A | 329 | * | U | 351 | G | 352 | cWW | cWW |
| 4 | IL_4BTS_280 | 4BTS | 0.1470 | 3 | DA | SSU rRNA | U | 309 | C | 310 | A | 314 | * | U | 336 | G | 337 | cWW | cWW |
| 5 | IL_3JAM_021 | 3JAM | 0.1810 | 3 | 2 | SSU rRNA | U | 317 | U | 318 | A | 322 | * | U | 344 | G | 345 | cWW | cWW |
| 6 | IL_4IOA_023 | 4IOA | 0.7065 | 0 | X | LSU rRNA | U | 942 | U | 943 | A | 944 | * | U | 860 | G | 861 | cWW | cWW |
| 7 | IL_5AJ3_009 | 5AJ3 | 0.7203 | 0 | A | SSU rRNA | U | 131 | A | 132 | G | 133 | * | C | 119 | A | 120 | cWW | cWW |
| 8 | IL_3J9M_070 | 3J9M | 0.7495 | 0 | AA | SSU rRNA | C | 775 | A | 776 | G | 777 | * | C | 765 | G | 766 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UUUCGA*UG | 2 |
| UAGU*AG | 1 |
| UUUUGA*UG | 1 |
| UCUCGA*UG | 1 |
| UUA*UG | 1 |
| UAG*CA | 1 |
| CAG*CG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UUCG* | 2 |
| A* | 2 |
| AG* | 1 |
| UUUG* | 1 |
| CUCG* | 1 |
| U* | 1 |
Release history
| Release | 2.0 |
|---|---|
| Date | 2017-04-24 |
| Status | New id, 2 parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (8)
- Basepair signature
- cWW-L-cWW
- Heat map statistics
- Min 0.14 | Avg 0.49 | Max 0.90
Coloring options: