Motif IL_55953.3 Version IL_55953.3 of this group appears in releases 3.77 to 3.88
#S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | break | 7 | 8 | 9 | 10 | 11 | 12 | 1-12 | 2-11 | 5-8 | 6-7 | ||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | IL_4W90_002 | 4W90 | 0.0958 | 0 | C | cyclic di-AMP riboswitch | G | 28 | G | 29 | A | 30 | C | 31 | C | 32 | C | 33 | * | G | 101 | C | 102 | U | 103 | A | 104 | A | 105 | C | 106 | cWW | tSH | cBW | cWW |
2 | IL_4QK9_001 | 4QK9 | 0.0000 | 0 | A | C-di-AMP riboswitch | G | 29 | G | 30 | A | 31 | C | 32 | C | 33 | C | 34 | * | G | 98 | C | 99 | U | 100 | A | 101 | A | 102 | C | 103 | cWW | tSH | ncBW | cWW |
3 | IL_4QLM_002 | 4QLM | 0.1136 | 0 | A | cyclic di-AMP riboswitch | G | 27 | G | 28 | A | 29 | C | 30 | C | 31 | C | 32 | * | G | 96 | C | 97 | U | 98 | A | 99 | A | 100 | C | 101 | cWW | tSH | ncBW | cWW |
4 | IL_6N5P_001 | 6N5P | 0.1296 | 0 | A | cyclic di-AMP riboswitch | G | 31 | G | 32 | A | 33 | A | 34 | C | 35 | C | 36 | * | G | 99 | C | 100 | U | 101 | A | 102 | A | 103 | C | 104 | cWW | tSH | ncBW | cWW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
GGACCC*GCUAAC | 3 |
GGAACC*GCUAAC | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
GACC*CUAA | 3 |
GAAC*CUAA | 1 |
Release history
Release | 3.77 | 3.78 | 3.79 | 3.80 | 3.81 | 3.82 | 3.83 | 3.84 | 3.85 | 3.86 | 3.87 | 3.88 |
---|---|---|---|---|---|---|---|---|---|---|---|---|
Date | 2023-12-06 | 2024-01-03 | 2024-01-03 | 2024-01-31 | 2024-02-28 | 2024-03-27 | 2024-04-24 | 2024-05-22 | 2024-06-19 | 2024-07-17 | 2024-08-14 | 2024-09-11 |
Status | Updated, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (4)
- Basepair signature
- cWW-tSH-tHS-R-L-L-R-cWW
- Heat map statistics
- Min 0.10 | Avg 0.09 | Max 0.16
Coloring options: