#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3break 4 51-52-43-4
1 IL_2AW7_0252AW70.58840A16S ribosomal RNAU472U473G474*U458A459cWWcWW
2 IL_4A1B_0184A1B0.54160126S RRNAU466A467A468*U511G512cWWcWW
3 IL_3U5H_0373U5H0.41720525S rRNAU1111A1112G1113*C969A970cWWcWW
4 IL_4A1B_0424A1B0.40420126S RRNAU1138A1139G1140*C994A995cWWcWW
5 IL_3V2F_0883V2F0.44020A23S Ribosomal RNAC2498C2499U2500*A2453G2454cWWcWW
6 IL_4IOA_0854IOA0.41610X LSU rRNAC2477C2478U2479*A2432G2433cWWcWW
7 IL_2QBG_0902QBG0.26180B23S rRNAC2498C2499U2500*A2453G2454cWWcWW
8 IL_2QBG_0272QBG0.23260B23S rRNAG940A941G942*C837C838cWWcWW
9 IL_4IOA_0214IOA0.19470Single stack bend (H)X LSU rRNAG951A952G953*C850C851cWWcWW
10 IL_3V2F_0243V2F0.17130A23S Ribosomal RNAG940A941G942*C837C838cWWcWW
11 IL_4IOA_0054IOA0.00000Single stack bend (H)X LSU rRNAA189A190G191*C160U161cWWcWW
12 IL_4A1B_0014A1B0.13730126S RRNAG54A55G56*C25C26cWWcWW
13 IL_3U5H_0043U5H0.18170525S rRNAG56A57G58*C27C28cWWcWW
14 IL_1S72_0051S720.20380Single stack bend (H)0 LSU rRNAG182A183G184*C153C154cWWcWW
15 IL_2QBG_0102QBG0.19510B23S rRNAG212A213G214*C183C184cWWcWW
16 IL_3V2F_0053V2F0.15380A23S Ribosomal RNAG212A213G214*C183C184cWWcWW
17 IL_4IOA_0564IOA0.28100Single stack bend (H)X LSU rRNAA1463A1464G1465*C1477U1478cWWncWWcWW
18 IL_1S72_0791S720.23610Single stack bend (H)0 LSU rRNAU2436A2437G2438*C2454A2455cWWcWW
19 IL_2AW7_0472AW70.28280A16S ribosomal RNAG1041A1042G1043*C998C999cWWcWW
20 IL_2QBG_0292QBG0.40410B23S rRNAG926A927A928*U850C851cWWcWW
21 IL_2AW7_0242AW70.41710A16S ribosomal RNAC477A478U479*G454G455cWWcWW
22 IL_1FJG_0461FJG0.40970A SSU rRNAG1143G1144C1145*G1127C1128cWWncWW
23 IL_4A1B_0734A1B0.39000126S RRNAU1802U1803G1804*C1694A1695cWWcWW
24 IL_3U5H_1463U5H0.3208075S rRNAC47U48G49*C29G30cWWcWW
25 IL_3U5H_0093U5H0.31160525S rRNAC163A164A165*U257G258cWWcWW
26 IL_2O3X_0012O3X0.36131Stack and bulgeB+ARNA (23-mer)G42U43C44*G5C7cWWcWW
27 IL_1O9M_0011O9M0.37991B+AEUBACTERIAL A-SITEG1494U1495C1496*G1405C1407cWWcWW
28 IL_4M30_0014M300.38840D+CRNA12U25U26A27*U28A2cWWcWW
29 IL_2QWY_0022QWY0.59720ASAM-II riboswitchC43U44A45*U21G22cWWcWW
30 IL_3MOJ_0043MOJ0.51730Single stack bendA LSU rRNAC2540A2541A2542*U2522G2523cWWcWW
31 IL_4A1B_0094A1B0.52380126S RRNAU173A174A175*U245G246cWWncWW
32 IL_3T4B_0013T4B0.51961AHCV IRES pseudoknot domain plus crystallization moduleU287A288C289*G135G137cWWcWW
33 IL_3TD1_0023TD10.77772A+BRNA (23-mer)C7G8C9*G39G42cWWcWW
34 IL_3TD1_0053TD10.80602B+ARNA (23-mer)C30G31C32*G16G19cWWcWW
35 IL_1MWL_0021MWL0.72432A+BRNA (22-mer)C6A7C8*G37G40cWWcWW
36 IL_1MWL_0031MWL0.71702B+ARNA (22-mer)C28A29C30*G15G18||AcWWcWW
37 IL_2O3X_0022O3X0.72532Decoding loop relatedA+BRNA (23-mer)C7A8C9*G39G42cWWcWW
38 IL_1O9M_0021O9M0.74242A+BEUBACTERIAL A-SITEC1407A1408C1409*G1491G1494cWWcWW
39 IL_1T0E_0011T0E0.63092Decoding loop relatedC+ARNA (17-mer)C16A17C18*G7G10||AcWWcWW
40 IL_1DUH_0011DUH0.75004A4.5S RNA DOMAIN IVC66||||4_555A67||||4_555A68||||4_555*U38G43cWWcWW
41 IL_1DUH_0051DUH0.75004A4.5S RNA DOMAIN IVC66A67A68*U38||||4_555G43||||4_555cWWcWW
42 IL_2O3X_0032O3X0.57542Decoding loop relatedB+ARNA (23-mer)C30A31C32*G16G19cWWcWW
43 IL_1ZX7_0071ZX70.55422H+GRNA (14-mer)C26A27C28*G7G10cWWcWW
44 IL_1ZX7_0011ZX70.48952B+ARNA (14-mer)C26A27C28*G7G10cWWcWW
45 IL_4IOA_1024IOA0.74912Decoding loop related (H)X LSU rRNAG2818G2819C2820*G2846C2849cWWcWW
46 IL_4IOA_0464IOA0.49931Intercalated cWW (H)X LSU rRNAG1241A1242G1243*U1232C1234cWWcWW
47 IL_2QBG_0842QBG0.59661B23S rRNAA2184U2185G2186*C2103U2105cWWcWW

3D structures

Complete motif including flanking bases
SequenceCounts
GAG*CC7
CAC*GAAG7
UAG*CA3
UAA*UG2
CCU*AG2
CC*GAG2
AAG*CU2
CAA*UG2
GUC*GUC2
CGC*GAAG2
UUG*UA1
AG*CCU1
GAA*UC1
CAU*GG1
GGC*GC1
UUG*CA1
CUG*CG1
UUA*UA1
CUA*UG1
UAC*GAG1
GAAG*CAC1
UACCAG*CAA1
CAA*UACCAG1
GGC*GGAC1
GAG*UAC1
AUG*CCU1
Non-Watson-Crick part of the motif
SequenceCounts
A*18
A*AA7
U*5
C*2
*A2
U*U2
A*A2
G*AA2
*C1
G*1
AA*A1
ACCA*A1
A*ACCA1
G*GA1
U*C1

Release history

Release1.101.111.121.13
Date2014-01-042014-02-012014-03-012014-03-29
StatusUpdated, 1 parentExact matchExact matchExact match

Parent motifs

Children motifs

Child motifCommon motif instancesOnly in IL_56465.4Only in the child motif
IL_56465.5
Compare
IL_2QBG_084, IL_3U5H_009, IL_4IOA_056, IL_2QBG_029, IL_3TD1_005, IL_3TD1_002, IL_3U5H_004, IL_1O9M_002, IL_2QWY_002, IL_1FJG_046, IL_4A1B_018, IL_2QBG_027, IL_3U5H_146, IL_2AW7_025, IL_1DUH_005, IL_1S72_005, IL_2O3X_001, IL_4A1B_042, IL_4A1B_073, IL_1O9M_001, IL_4IOA_085, IL_2QBG_090, IL_1MWL_003, IL_1MWL_002, IL_1ZX7_007, IL_2AW7_047, IL_1ZX7_001, IL_3U5H_037, IL_3MOJ_004, IL_4A1B_001, IL_4IOA_102, IL_1S72_079, IL_4IOA_005, IL_2QBG_010, IL_4IOA_021, IL_4IOA_046, IL_4A1B_009, IL_2O3X_002, IL_2AW7_024, IL_2O3X_003, IL_1T0E_001, IL_1DUH_001, IL_3T4B_001, IL_4M30_001IL_3V2F_024, IL_3V2F_088, IL_3V2F_005IL_4NVV_087, IL_1VW3_058, IL_1VW3_093, IL_4NVV_005, IL_1VW3_030, IL_4NVV_026, IL_1VW3_010
Annotations
  • (35)
  • Single stack bend (H) (5)
  • Decoding loop related (3)
  • Stack and bulge (1)
  • Single stack bend (1)
  • Intercalated cWW (H) (1)
  • Decoding loop related (H) (1)
  • Basepair signature
    cWW-L-cWW
    Heat map statistics
    Min 0.09 | Avg 0.54 | Max 1.00
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