Motif IL_57216.1 Version IL_57216.1 of this group appears in releases 1.0 to 1.0
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 8 | 1-8 | 2-7 | 3-6 | 4-5 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_3V2F_043 | 3V2F | 0.4657 | 1 | A | 23S Ribosomal RNA | C | 1202 | G | 1203 | A | 1204 | G | 1206 | * | U | 1240 | A | 1241 | A | 1242 | G | 1243 | cWW | tSH | cWW | |
| 2 | IL_2QBG_057 | 2QBG | 0.0000 | 1 | B | 23S rRNA | U | 1520 | G | 1521 | A | 1522 | G | 1524 | * | U | 1468 | A | 1469 | A | 1470 | G | 1471 | cWW | tSH | tHH | cWW |
| 3 | IL_3BNQ_005 | 3BNQ | 0.6845 | 1 | A+B | A site of human mitochondrial ribosome, A chain | G | 15 | C | 16 | A | 17 | G | 19 | * | C | 7 | A | 8 | C | 9 | C | 10 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CGAUG*UAAG | 1 |
| UGAUG*UAAG | 1 |
| GCAAG*CACC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GAU*AA | 2 |
| CAA*AC | 1 |
Release history
| Release | 1.0 |
|---|---|
| Date | 2013-03-04 |
| Status | > 2 parents |
Parent motifs
| Parent motif | Common motif instances | Only in IL_57216.1 | Only in the parent motif |
|---|---|---|---|
| IL_91547.1 Compare | IL_3V2F_043 | IL_2QBG_057, IL_3BNQ_005 | IL_4A1B_097, IL_3V2F_026 |
| IL_33965.1 Compare | IL_3BNQ_005 | IL_2QBG_057, IL_3V2F_043 | IL_2QBG_046 |
| IL_37150.1 Compare | IL_2QBG_057 | IL_3V2F_043, IL_3BNQ_005 |
Children motifs
| Child motif | Common motif instances | Only in IL_57216.1 | Only in the child motif |
|---|---|---|---|
| IL_10647.1 Compare | IL_3V2F_043 | IL_2QBG_057, IL_3BNQ_005 | IL_4A1B_097, IL_3V2F_026 |
| IL_09901.1 Compare | IL_3BNQ_005 | IL_2QBG_057, IL_3V2F_043 | IL_2QBG_046 |
| IL_95774.1 Compare | IL_2QBG_057 | IL_3V2F_043, IL_3BNQ_005 |
- Annotations
-
- (3)
- Basepair signature
- cWW-tSH-L-R-cWW
- Heat map statistics
- Min 0.47 | Avg 0.44 | Max 0.83
Coloring options: