Motif IL_57870.1 Version IL_57870.1 of this group appears in releases 0.1 to 0.6
#S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 13 | 14 | 1-14 | 2-9 | 3-12 | 4-5 | 6-10 | 8-14 | ||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | IL_3D2V_002 | 3D2V | 0.0000 | 1 | A | TPP riboswitch (THI element) | G | 10 | G | 11 | U | 12 | G | 13 | * | C | 26 | U | 27 | G | 28 | A | 29 | G | 30 | A | 31 | A | 32 | A | 33 | G | 34 | C | 36 | cWW | tSS | cWH | cWW | tWH | csS |
2 | IL_3D2V_005 | 3D2V | 0.0460 | 1 | B | TPP riboswitch (THI element) | G | 10 | G | 11 | U | 12 | G | 13 | * | C | 26 | U | 27 | G | 28 | A | 29 | G | 30 | A | 31 | A | 32 | A | 33 | G | 34 | C | 36 | cWW | tSS | cWH | cWW | tWH | csS |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
GGUG*CUGAGAAAGUC | 2 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
GU*UGAGAAAGU | 2 |
Release history
Release | 0.1 | 0.2 | 0.3 | 0.4 | 0.5 | 0.6 |
---|---|---|---|---|---|---|
Date | 2011-12-08 | 2011-12-08 | 2011-12-08 | 2011-12-08 | 2011-12-08 | 2012-04-02 |
Status | New id, no parents | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
Child motif | Common motif instances | Only in IL_57870.1 | Only in the child motif |
---|---|---|---|
IL_27243.1 Compare | IL_3D2V_002 | IL_3D2V_005 |
- Annotations
-
- (2)
- Basepair signature
- 14_cWW-tSS,cWH-cWH-cWW--tWH--cSS
- Heat map statistics
- Min 0.05 | Avg 0.02 | Max 0.05
Coloring options: