Motif IL_58291.4 Version IL_58291.4 of this group appears in releases 1.5 to 1.13
#S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | break | 5 | 6 | 1-6 | 2-3 | 2-5 | 4-5 | ||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | IL_1NTB_003 | 1NTB | 0.3990 | 0 | A+B | RNA (22-mer) + RNA (18-mer) | C | 15 | U | 16 | U | 17 | C | 18 | * | G | 110 | G | 111 | cWW | cWW | |||
2 | IL_4IOA_022 | 4IOA | 0.3496 | 0 | Major groove platform; stack outside cWW (H) | X | LSU rRNA | U | 857 | G | 858 | U | 859 | U | 860 | * | A | 944 | G | 945 | cWW | cWW | ||
3 | IL_1S72_008 | 1S72 | 0.2443 | 0 | Major groove platform; stack outside cWW (H) | 0 | LSU rRNA | C | 245 | G | 246 | A | 247 | A | 248 | * | U | 265 | G | 266 | cWW | tSH | cWW | |
4 | IL_3U5F_045 | 3U5F | 0.1313 | 0 | 6 | 18S rRNA | C | 962 | A | 963 | U | 964 | U | 965 | * | A | 865 | G | 866 | cWW | cWW | |||
5 | IL_4BPP_042 | 4BPP | 0.0000 | 0 | A | 18S RRNA | C | 940 | A | 941 | U | 942 | U | 943 | * | A | 843 | G | 844 | cWW | ncSH | cWW | ||
6 | IL_3V2F_047 | 3V2F | 0.2469 | 0 | A | 23S Ribosomal RNA | G | 1310 | G | 1311 | U | 1312 | U | 1313 | * | A | 1603 | C | 1604 | cWW | cSH | cWW | ||
7 | IL_4A1B_065 | 4A1B | 0.5590 | 0 | 1 | 26S RRNA | G | 1518 | G | 1519 | U | 1520 | U | 1521 | * | A | 1859 | C | 1860 | cWW | cWW | |||
8 | IL_4IOA_048 | 4IOA | 0.6012 | 0 | Major groove platform; stack outside cWW (H) | X | LSU rRNA | G | 1323 | G | 1324 | U | 1325 | U | 1326 | * | A | 1619 | C | 1620 | cWW | cWW | ||
9 | IL_1S72_050 | 1S72 | 0.5963 | 0 | Major groove platform; stack outside cWW (H) | 0 | LSU rRNA | G | 1416 | G | 1417 | U | 1418 | U | 1419 | * | A | 1678 | C | 1679 | cWW | cWW | ||
10 | IL_3U5H_067 | 3U5H | 0.5968 | 0 | 5 | 25S rRNA | G | 1492 | G | 1493 | U | 1494 | U | 1495 | * | A | 1835 | C | 1836 | cWW | cWW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
GGUU*AC | 5 |
CAUU*AG | 2 |
CUUC*GG | 1 |
UGUU*AG | 1 |
CGAA*UG | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
GU* | 6 |
AU* | 2 |
UU* | 1 |
GA* | 1 |
Release history
Release | 1.5 | 1.6 | 1.7 | 1.8 | 1.9 | 1.10 | 1.11 | 1.12 | 1.13 |
---|---|---|---|---|---|---|---|---|---|
Date | 2013-08-03 | 2013-08-31 | 2013-09-28 | 2013-11-05 | 2013-12-07 | 2014-01-04 | 2014-02-01 | 2014-03-01 | 2014-03-29 |
Status | Updated, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
Parent motif | Common motif instances | Only in IL_58291.4 | Only in the parent motif |
---|---|---|---|
IL_58291.3 Compare | IL_4IOA_048, IL_3U5H_067, IL_1S72_008, IL_1S72_050, IL_1NTB_003, IL_3V2F_047, IL_4A1B_065, IL_4IOA_022, IL_3U5F_045 | IL_4BPP_042 |
Children motifs
Child motif | Common motif instances | Only in IL_58291.4 | Only in the child motif |
---|---|---|---|
IL_58291.5 Compare | IL_4IOA_048, IL_3U5H_067, IL_1S72_008, IL_1S72_050, IL_1NTB_003, IL_3U5F_045, IL_4A1B_065, IL_4IOA_022, IL_4BPP_042 | IL_3V2F_047 | IL_4NVV_049 |
- Annotations
-
- (6)
- Major groove platform; stack outside cWW (H) (4)
- Basepair signature
- cWW-L-L-cWW
- Heat map statistics
- Min 0.07 | Avg 0.41 | Max 0.69
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