#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3 4break 5 61-62-32-54-5
1 IL_1NTB_0031NTB0.39900A+BRNA (22-mer) + RNA (18-mer)C15U16U17C18*G110G111cWWcWW
2 IL_4IOA_0224IOA0.34960Major groove platform; stack outside cWW (H)X LSU rRNAU857G858U859U860*A944G945cWWcWW
3 IL_1S72_0081S720.24430Major groove platform; stack outside cWW (H)0 LSU rRNAC245G246A247A248*U265G266cWWtSHcWW
4 IL_3U5F_0453U5F0.13130618S rRNAC962A963U964U965*A865G866cWWcWW
5 IL_4BPP_0424BPP0.00000A18S RRNAC940A941U942U943*A843G844cWWncSHcWW
6 IL_3V2F_0473V2F0.24690A23S Ribosomal RNAG1310G1311U1312U1313*A1603C1604cWWcSHcWW
7 IL_4A1B_0654A1B0.55900126S RRNAG1518G1519U1520U1521*A1859C1860cWWcWW
8 IL_4IOA_0484IOA0.60120Major groove platform; stack outside cWW (H)X LSU rRNAG1323G1324U1325U1326*A1619C1620cWWcWW
9 IL_1S72_0501S720.59630Major groove platform; stack outside cWW (H)0 LSU rRNAG1416G1417U1418U1419*A1678C1679cWWcWW
10 IL_3U5H_0673U5H0.59680525S rRNAG1492G1493U1494U1495*A1835C1836cWWcWW

3D structures

Complete motif including flanking bases
SequenceCounts
GGUU*AC5
CAUU*AG2
CUUC*GG1
UGUU*AG1
CGAA*UG1
Non-Watson-Crick part of the motif
SequenceCounts
GU*6
AU*2
UU*1
GA*1

Release history

Release1.51.61.71.81.91.101.111.121.13
Date2013-08-032013-08-312013-09-282013-11-052013-12-072014-01-042014-02-012014-03-012014-03-29
StatusUpdated, 1 parentExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact match

Parent motifs

Parent motifCommon motif instancesOnly in IL_58291.4Only in the parent motif
IL_58291.3
Compare
IL_4IOA_048, IL_3U5H_067, IL_1S72_008, IL_1S72_050, IL_1NTB_003, IL_3V2F_047, IL_4A1B_065, IL_4IOA_022, IL_3U5F_045IL_4BPP_042

Children motifs

Child motifCommon motif instancesOnly in IL_58291.4Only in the child motif
IL_58291.5
Compare
IL_4IOA_048, IL_3U5H_067, IL_1S72_008, IL_1S72_050, IL_1NTB_003, IL_3U5F_045, IL_4A1B_065, IL_4IOA_022, IL_4BPP_042IL_3V2F_047IL_4NVV_049
Annotations
  • (6)
  • Major groove platform; stack outside cWW (H) (4)
  • Basepair signature
    cWW-L-L-cWW
    Heat map statistics
    Min 0.07 | Avg 0.41 | Max 0.69
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