Motif IL_59137.7 Version IL_59137.7 of this group appears in releases 3.47 to 3.47
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | break | 3 | 4 | 1-4 | 2-3 | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_5TBW_037 | 5TBW | 0.4426 | 1 | Single bulged G | 1 | LSU rRNA | A | 983 | U | 985 | * | A | 1099 | U | 1100 | cWW | cWW |
| 2 | IL_3IGI_004 | 3IGI | 0.4497 | 1 | Single bulged G | A | Group II catalytic intron D1-D4-3 | U | 82 | U | 84 | * | A | 99 | A | 100 | cWW | cWW |
| 3 | IL_5J7L_271 | 5J7L | 0.3924 | 1 | Single bulged G | DA | LSU rRNA | U | 913 | C | 915 | * | G | 862 | A | 863 | cWW | cWW |
| 4 | IL_1U9S_006 | 1U9S | 0.6122 | 1 | Major groove intercalation | A | RNase P class A | U | 158 | C | 160 | * | G | 140 | G | 141 | ncWW | cWW |
| 5 | IL_4IOA_101 | 4IOA | 0.5769 | 1 | Single bulged G | X | LSU rRNA | U | 2853 | C | 2855 | * | G | 2813 | G | 2814 | cWW | cWW |
| 6 | IL_3D0U_005 | 3D0U | 0.5359 | 1 | Single bulged G | A | Lysine riboswitch | U | 106 | G | 108 | * | C | 81 | G | 82 | cWW | ncWW |
| 7 | IL_3DIL_005 | 3DIL | 0.4723 | 1 | Single bulged G | A | Lysine riboswitch | U | 109 | C | 111 | * | G | 84 | G | 85 | cWW | cWW |
| 8 | IL_4LFB_016 | 4LFB | 0.4174 | 1 | Single bulged G | A | SSU rRNA | U | 387 | A | 389 | * | U | 375 | G | 376 | cWW | cWW |
| 9 | IL_5J7L_019 | 5J7L | 0.3629 | 1 | Single bulged G | AA | SSU rRNA | U | 387 | A | 389 | * | U | 375 | G | 376 | cWW | cWW |
| 10 | IL_4C7O_004 | 4C7O | 0.3134 | 1 | Single bulged G | E | SRP RNA | U | 27 | U | 29 | * | A | 15 | A | 16 | cWW | cWW |
| 11 | IL_5U30_002 | 5U30 | 0.4268 | 1 | Single bulged G | B | sgRNA | C | 3 | U | 4 | * | A | 7 | G | 9 | cWW | cWW |
| 12 | IL_4WF9_023 | 4WF9 | 0.3300 | 1 | Single bulged G | X | LSU rRNA | U | 747 | U | 748 | * | G | 773 | A | 775 | cWW | cWW |
| 13 | IL_5J7L_262 | 5J7L | 0.3611 | 1 | Single bulged G | DA | LSU rRNA | U | 702 | U | 703 | * | G | 728 | A | 730 | cWW | cWW |
| 14 | IL_4IOA_016 | 4IOA | 0.3893 | 1 | Single bulged G | X | LSU rRNA | U | 715 | U | 716 | * | G | 741 | A | 743 | cWW | cWW |
| 15 | IL_4Y4O_197 | 4Y4O | 0.4788 | 1 | Single bulged G | 2A | LSU rRNA | G | 702 | U | 703 | * | G | 728 | C | 730 | cWW | cWW |
| 16 | IL_3SUX_004 | 3SUX | 0.4209 | 1 | Single bulged G | X | THF riboswitch | G | 76||||17_555 | U | 78||||17_555 | * | G | 20||||17_555 | C | 21||||17_555 | cWW | cWW |
| 17 | IL_3SUX_001 | 3SUX | 0.4209 | 1 | Single bulged G | X | THF riboswitch | G | 76 | U | 78 | * | G | 20 | C | 21 | cWW | cWW |
| 18 | IL_4LVW_002 | 4LVW | 0.4222 | 1 | Single bulged G | A | THF riboswitch | G | 67 | U | 69 | * | G | 17 | C | 18 | cWW | cWW |
| 19 | IL_4V9F_026 | 4V9F | 0.4007 | 1 | Single bulged G | 0 | LSU rRNA | A | 793 | U | 794 | * | A | 819 | U | 821 | cWW | cWW |
| 20 | IL_4V88_442 | 4V88 | 0.3700 | 1 | Single bulged G | A6 | SSU rRNA | U | 1627 | U | 1628 | * | G | 1149 | A | 1151 | cWW | cWW |
| 21 | IL_6CZR_148 | 6CZR | 0.2905 | 1 | Single bulged G | 1a | SSU rRNA | U | 1373 | U | 1374 | * | G | 903 | G | 905 | ncWW | cWW |
| 22 | IL_5J7L_040 | 5J7L | 0.3321 | 1 | Single bulged G | AA | SSU rRNA | U | 1390 | U | 1391 | * | G | 925 | G | 927 | cWW | cWW |
| 23 | IL_4LFB_036 | 4LFB | 0.3054 | 1 | Single bulged G | A | SSU rRNA | U | 1390 | U | 1391 | * | G | 925 | G | 927 | cWW | cWW |
| 24 | IL_2IZN_005 | 2IZN | 0.1760 | 1 | Single bulged G | R | RNA (19-mer) | C | 5||||P_P | C | 7||||P_P | * | G | 14||||P_P | G | 15||||P_P | ||
| 25 | IL_2IZN_001 | 2IZN | 0.1760 | 1 | Single bulged G | R | RNA (19-mer) | C | 5||||P_1 | C | 7||||P_1 | * | G | 14||||P_1 | G | 15||||P_1 | cWW | cWW |
| 26 | IL_6CZR_113 | 6CZR | 0.0000 | 1 | Single bulged G | 1a | SSU rRNA | U | 31 | A | 33 | * | U | 536 | A | 537 | cWW | cWW |
| 27 | IL_4LFB_001 | 4LFB | 0.1596 | 1 | Single bulged G | A | SSU rRNA | U | 30 | A | 32 | * | U | 552 | A | 553 | cWW | cWW |
| 28 | IL_5J7L_001 | 5J7L | 0.1872 | 1 | Single bulged G | AA | SSU rRNA | U | 30 | A | 32 | * | U | 552 | A | 553 | cWW | cWW |
| 29 | IL_3NDB_004 | 3NDB | 0.2596 | 1 | Single bulged G | M | SRP RNA | G | 137 | G | 138 | * | C | 239 | C | 241 | cWW | ncWW |
| 30 | IL_5DE8_001 | 5DE8 | 0.3921 | 1 | Single bulged G | A | sc1 | C | 30 | G | 31 | * | C | 5 | G | 7 | cWW | cWW |
| 31 | IL_5DEA_002 | 5DEA | 0.3780 | 1 | Single bulged G | C | sc1 | C | 30 | G | 31 | * | C | 5 | G | 7 | cWW | cWW |
| 32 | IL_4V9F_010 | 4V9F | 0.5665 | 1 | Single bulged G | 0 | LSU rRNA | G | 274 | G | 275 | * | U | 374 | C | 376 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UU*GGA | 4 |
| UGC*GG | 3 |
| GGU*GC | 3 |
| UU*GGG | 3 |
| UGA*UA | 3 |
| UGU*AA | 2 |
| UGA*UG | 2 |
| CGC*GG | 2 |
| CG*CGG | 2 |
| AGU*AU | 1 |
| UGC*GA | 1 |
| UGG*CG | 1 |
| CU*AGG | 1 |
| GU*GGC | 1 |
| AU*AGU | 1 |
| GG*CGC | 1 |
| GG*UGC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| G* | 18 |
| *G | 14 |
Release history
| Release | 3.47 |
|---|---|
| Date | 2021-07-21 |
| Status | Updated, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Single bulged G (31)
- Major groove intercalation (1)
- Basepair signature
- cWW-cWW
- Heat map statistics
- Min 0.06 | Avg 0.48 | Max 0.93
Coloring options: