Motif IL_59557.1 Version IL_59557.1 of this group appears in releases 0.3 to 0.4
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 1-7 | 2-6 | 3-4 | 4-5 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_1S72_072 | 1S72 | 0.0000 | 0 | 0 | LSU rRNA | G | 2090 | G | 2091 | G | 2092 | G | 2093 | * | U | 2652 | A | 2653 | C | 2654 | cWW | cWW | cSH | cWW | |
| 2 | IL_2ZJR_103 | 2ZJR | 0.5281 | 0 | Isolated non-canonical cWW with bulges (H) | Y | 5S rRNA | G | 66 | C | 67 | A | 68 | G | 69 | * | C | 19 | A | 20 | C | 21 | cWW | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GGGG*UAC | 1 |
| GCAG*CAC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GG*A | 1 |
| CA*A | 1 |
Release history
Parent motifs
| Parent motif | Common motif instances | Only in IL_59557.1 | Only in the parent motif |
|---|---|---|---|
| IL_82367.1 Compare | IL_2ZJR_103, IL_1S72_072 | IL_1MMS_003, IL_1MMS_001, IL_1QA6_003, IL_2ZJR_038, IL_1QA6_001 |
Children motifs
| Child motif | Common motif instances | Only in IL_59557.1 | Only in the child motif |
|---|---|---|---|
| IL_78858.1 Compare | IL_1S72_072 | IL_2ZJR_103 | |
| IL_75870.1 Compare | IL_2ZJR_103 | IL_1S72_072 | IL_2ZJR_059 |
- Annotations
-
- (1)
- Isolated non-canonical cWW with bulges (H) (1)
- Basepair signature
- Heat map statistics
- Min 0.53 | Avg 0.26 | Max 0.53
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