#SLoop idPDBDisc#Non-coreChain(s)Standardized name 1 2 3 4 5 6break 7 8 91-95-86-7
1 IL_1VW3_0461VW30.18890A21S ribosomal RNAG1603A1604U1605A1606A1607U1608*A1904G1905C1906cWWtHScWW
2 IL_4NVV_0644NVV0.07290A23S Ribosomal RNAG1698A1699G1700A1701A1702C1703*G2026A2027C2028cWWtHScWW
3 IL_4IOA_0624IOA0.00000X LSU rRNAG1668A1669G1670A1671A1672C1673*G1987A1988C1989cWWtHScWW
4 IL_2QBG_0622QBG0.10220B23S rRNAG1651A1652G1653A1654A1655C1656*G2004A2005C2006cWWtHScWW
5 IL_1S72_0591S720.239910 LSU rRNAG1728A1729C1731A1732A1733C1734*G2045G2046C2047cWWtHScWW

3D structures

Complete motif including flanking bases
SequenceCounts
GAGAAC*GAC3
GAUAAU*AGC1
GAGCAAC*GGC1
Non-Watson-Crick part of the motif
SequenceCounts
AGAA*A3
AUAA*G1
AGCAA*G1

Release history

Release1.14
Date2014-04-27
StatusNew id, 1 parent

Parent motifs

Parent motifCommon motif instancesOnly in IL_59864.1Only in the parent motif
IL_45262.4
Compare
IL_2QBG_062, IL_4IOA_062, IL_1S72_059IL_4NVV_064, IL_1VW3_046IL_3V2F_061

Children motifs

Child motifCommon motif instancesOnly in IL_59864.1Only in the child motif
IL_59864.2
Compare
IL_4NVV_064, IL_1VW3_046, IL_2QBG_062, IL_1S72_059, IL_4IOA_062IL_4CUX_049
Annotations
  • (5)
  • Basepair signature
    cWW-L-L-L-tHS-cWW
    Heat map statistics
    Min 0.07 | Avg 0.16 | Max 0.37
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