Motif IL_59864.1 Version IL_59864.1 of this group appears in releases 1.14 to 1.14
#S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | break | 7 | 8 | 9 | 1-9 | 5-8 | 6-7 | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | IL_1VW3_046 | 1VW3 | 0.1889 | 0 | A | 21S ribosomal RNA | G | 1603 | A | 1604 | U | 1605 | A | 1606 | A | 1607 | U | 1608 | * | A | 1904 | G | 1905 | C | 1906 | cWW | tHS | cWW |
2 | IL_4NVV_064 | 4NVV | 0.0729 | 0 | A | 23S Ribosomal RNA | G | 1698 | A | 1699 | G | 1700 | A | 1701 | A | 1702 | C | 1703 | * | G | 2026 | A | 2027 | C | 2028 | cWW | tHS | cWW |
3 | IL_4IOA_062 | 4IOA | 0.0000 | 0 | X | LSU rRNA | G | 1668 | A | 1669 | G | 1670 | A | 1671 | A | 1672 | C | 1673 | * | G | 1987 | A | 1988 | C | 1989 | cWW | tHS | cWW |
4 | IL_2QBG_062 | 2QBG | 0.1022 | 0 | B | 23S rRNA | G | 1651 | A | 1652 | G | 1653 | A | 1654 | A | 1655 | C | 1656 | * | G | 2004 | A | 2005 | C | 2006 | cWW | tHS | cWW |
5 | IL_1S72_059 | 1S72 | 0.2399 | 1 | 0 | LSU rRNA | G | 1728 | A | 1729 | C | 1731 | A | 1732 | A | 1733 | C | 1734 | * | G | 2045 | G | 2046 | C | 2047 | cWW | tHS | cWW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
GAGAAC*GAC | 3 |
GAUAAU*AGC | 1 |
GAGCAAC*GGC | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
AGAA*A | 3 |
AUAA*G | 1 |
AGCAA*G | 1 |
Release history
Release | 1.14 |
---|---|
Date | 2014-04-27 |
Status | New id, 1 parent |
Parent motifs
Parent motif | Common motif instances | Only in IL_59864.1 | Only in the parent motif |
---|---|---|---|
IL_45262.4 Compare | IL_2QBG_062, IL_4IOA_062, IL_1S72_059 | IL_4NVV_064, IL_1VW3_046 | IL_3V2F_061 |
Children motifs
Child motif | Common motif instances | Only in IL_59864.1 | Only in the child motif |
---|---|---|---|
IL_59864.2 Compare | IL_4NVV_064, IL_1VW3_046, IL_2QBG_062, IL_1S72_059, IL_4IOA_062 | IL_4CUX_049 |
- Annotations
-
- (5)
- Basepair signature
- cWW-L-L-L-tHS-cWW
- Heat map statistics
- Min 0.07 | Avg 0.16 | Max 0.37
Coloring options: