Motif IL_60288.1 Version IL_60288.1 of this group appears in releases 0.5 to 0.5
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | break | 3 | 4 | 5 | 1-5 | 2-3 | 4-5 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_3PYO_098 | 3PYO | 0.8103 | 0 | B | 5S rRNA | C | 17 | G | 18 | * | C | 65 | A | 66 | G | 67 | cWW | cWW | |
| 2 | IL_3O58_150 | 3O58 | 0.7479 | 1 | 1 | LSU rRNA | C | 3257 | U | 3258 | * | A | 3227 | C | 3228 | G | 3230 | cWW | cWW | |
| 3 | IL_2QBG_095 | 2QBG | 0.0000 | 0 | B | LSU rRNA | C | 2507 | G | 2508 | * | U | 2580 | G | 2581 | G | 2582 | cWW | cWW | chH |
| 4 | IL_3O58_131 | 3O58 | 0.1856 | 0 | 1 | LSU rRNA | C | 2876 | G | 2877 | * | U | 2949 | G | 2950 | G | 2951 | cWW | ncWW | chH |
| 5 | IL_3O58_127 | 3O58 | 0.2969 | 0 | 1 | LSU rRNA | U | 2862 | G | 2863 | * | U | 2826 | U | 2827 | G | 2828 | ncWW | cWW | |
| 6 | IL_2ZJR_089 | 2ZJR | 0.3116 | 0 | X | LSU rRNA | C | 2486 | G | 2487 | * | U | 2559 | G | 2560 | G | 2561 | ncWW | cWW | chH |
| 7 | IL_2QBG_092 | 2QBG | 0.5658 | 0 | B | LSU rRNA | U | 2493 | G | 2494 | * | U | 2457 | G | 2458 | A | 2459 | cWW | cWW | |
| 8 | IL_3O58_103 | 3O58 | 0.8184 | 1 | 1 | LSU rRNA | U | 2200 | G | 2201 | * | U | 2241 | A | 2242 | A | 2244 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CG*UGG | 3 |
| CG*CAG | 1 |
| CU*ACGG | 1 |
| UUG*UG | 1 |
| UG*UGA | 1 |
| UG*UAAA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| *G | 4 |
| *A | 1 |
| *CG | 1 |
| U* | 1 |
| *AA | 1 |
Release history
| Release | 0.5 |
|---|---|
| Date | 2011-12-08 |
| Status | New id, 1 parent |
Parent motifs
| Parent motif | Common motif instances | Only in IL_60288.1 | Only in the parent motif |
|---|---|---|---|
| IL_45564.3 Compare | IL_2ZJR_089 | IL_2QBG_092, IL_2QBG_095, IL_3PYO_098, IL_3O58_131, IL_3O58_127, IL_3O58_103, IL_3O58_150 | IL_1FJG_028, IL_1FJG_024, IL_3F1H_089, IL_1S72_080, IL_3NKB_002, IL_1G1X_002, IL_3F1H_075, IL_2ZJR_083, IL_2ZJR_085, IL_2ZJR_086, IL_1XJR_002, IL_3F1H_103, IL_3F1H_090, IL_1I6U_001, IL_1I6U_003, IL_1QA6_004, IL_3F1H_008, IL_1QA6_002, IL_1S03_004, IL_1S03_008, IL_2ZJR_074, IL_3OWZ_007, IL_3OWZ_003, IL_2ZJR_098, IL_3F1H_108 |
Children motifs
| Child motif | Common motif instances | Only in IL_60288.1 | Only in the child motif |
|---|---|---|---|
| IL_39199.1 Compare | IL_2ZJR_089, IL_2QBG_092, IL_2QBG_095 | IL_3O58_131, IL_3O58_127, IL_3O58_150, IL_3PYO_098, IL_3O58_103 | IL_1FJG_028, IL_1FJG_027, IL_1FJG_024, IL_3UXR_009, IL_3UXR_091, IL_1S72_080, IL_2XZM_079, IL_3UXR_088, IL_1ET4_010, IL_1S72_061, IL_2AW7_031, IL_3NKB_002, IL_2AW7_034, IL_3U5H_108, IL_2QBG_001, IL_2QBG_025, IL_2QBG_044, IL_3D0U_004, IL_1G1X_002, IL_1G1X_001, IL_2QBG_049, IL_2QBG_064, IL_3U5H_084, IL_2ZJR_085, IL_2ZJR_086, IL_3Q1Q_001, IL_4A1B_087, IL_2ZJR_062, IL_2QBG_091, IL_1XJR_002, IL_2ZJR_083, IL_3P49_007, IL_4A1B_021, IL_1I6U_001, IL_1I6U_003, IL_1QA6_004, IL_4A1B_108, IL_3UXR_075, IL_1ET4_006, IL_3UXR_090, IL_4A1B_106, IL_3DIR_004, IL_3UXR_094, IL_2QBG_078, IL_1QA6_002, IL_1S03_004, IL_4A1B_080, IL_1S03_008, IL_1F7Y_001, IL_3OWZ_007, IL_3P49_010, IL_3OWZ_003, IL_4A1B_111, IL_3SUX_002, IL_2XZM_055, IL_2ZJR_074 |
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