Motif IL_60676.4 Version IL_60676.4 of this group appears in releases 3.48 to 3.53
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | break | 3 | 4 | 5 | 1-5 | 2-3 | 2-4 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4Y4O_234 | 4Y4O | 0.7118 | 0 | Single stack bend (H) | 2A | LSU rRNA | C | 1462 | C | 1463 | * | G | 1448 | A | 1449 | G | 1450 | cWW | cWW | |
| 2 | IL_4LFB_053 | 4LFB | 0.5694 | 0 | Not an internal loop | A | SSU rRNA | C | 1259 | C | 1260 | * | G | 1274 | A | 1275 | G | 1276 | cWW | ncWW | ntSH |
| 3 | IL_7A0S_066 | 7A0S | 0.2120 | 1 | Minor groove platform, major groove intercalation | X | LSU rRNA | C | 1885 | G | 1886 | * | C | 1829 | G | 1831 | G | 1832 | cWW | cWW | |
| 4 | IL_5TBW_084 | 5TBW | 0.0000 | 1 | Major groove intercalation | 1 | LSU rRNA | C | 2245 | G | 2246 | * | C | 2196 | A | 2198 | G | 2199 | cWW | cWW | |
| 5 | IL_4Y4O_244 | 4Y4O | 0.1198 | 1 | Minor groove platform, major groove intercalation (H) | 2A | LSU rRNA | C | 1902 | G | 1903 | * | C | 1837 | G | 1839 | G | 1840 | cWW | cWW | |
| 6 | IL_4V9F_066 | 4V9F | 0.1318 | 1 | Minor groove platform, major groove intercalation | 0 | LSU rRNA | C | 1943 | G | 1944 | * | C | 1893 | A | 1895 | G | 1896 | cWW | cWW | |
| 7 | IL_4TS2_002 | 4TS2 | 0.4795 | 3 | Minor groove platform | X+Y | Spinach aptamer RNA, bimolecular construct | G | 14 | A | 17 | * | U | 82 | A | 84 | C | 85 | cWW | cWW | cSW |
| 8 | IL_6CZR_155 | 6CZR | 0.6328 | 2 | Minor groove platform | 1a | SSU rRNA | G | 1040 | G | 1041 | * | U | 1181 | G | 1184 | C | 1185 | cWW | cWW | ntSH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CC*GAG | 2 |
| CG*CCGG | 2 |
| CG*CCAG | 2 |
| GAAA*UAAC | 1 |
| GG*UCAGC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| *A | 2 |
| *CG | 2 |
| *CA | 2 |
| AA*AA | 1 |
| *CAG | 1 |
- Annotations
-
- Minor groove platform (2)
- Minor groove platform, major groove intercalation (2)
- Not an internal loop (1)
- Single stack bend (H) (1)
- Minor groove platform, major groove intercalation (H) (1)
- Major groove intercalation (1)
- Basepair signature
- cWW-R-cWW
- Heat map statistics
- Min 0.12 | Avg 0.46 | Max 0.86
Coloring options: