Motif IL_60797.1 Version IL_60797.1 of this group appears in releases 3.95 to 3.99
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | break | 10 | 11 | 12 | 13 | 14 | 15 | 16 | 17 | 1-17 | 2-16 | 3-15 | 4-14 | 5-13 | 6-12 | 8-11 | 9-10 | 9-11 | |||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_1M5K_003 | 1M5K | 0.0991 | 3 | B | Hairpin ribozyme | G | 19 | A | 20 | G | 21 | A | 22 | A | 23 | A | 24 | C | 25 | A | 26 | C | 27 | * | G | 54 | G | 55 | A | 57 | A | 59 | U | 60 | A | 62 | C | 63 | C | 64 | cWW | cWWa | tSH | tHW | tHW | cWW | cWW | ncWW | |
| 2 | IL_3GS5_002 | 3GS5 | 0.0639 | 3 | C | Hairpin ribozyme | G | 31 | A | 32 | G | 33 | A | 34 | A | 35 | A | 36 | C | 37 | A | 38 | C | 39 | * | G | 48 | G | 49 | A | 51 | A | 53 | U | 54 | A | 56 | C | 57 | C | 58 | cWW | cWWa | tSH | tHW | ncBW | ntWH | cWW | cWW | |
| 3 | IL_2P7E_001 | 2P7E | 0.0000 | 3 | C+D | Ribozyme strand II + Ribozyme strand III | G | 19 | A | 20 | G | 21 | A | 22 | A | 23 | A | 24 | C | 25 | A | 26 | C | 27 | * | G | 35 | G | 36 | A | 38 | A | 40 | U | 41 | A | 43 | C | 44 | C | 45 | cWW | cWWa | tSH | tHW | tHW | cWW | cWW | ||
| 4 | IL_3BBM_002 | 3BBM | 0.0519 | 3 | B+C | Loop A and Loop B Ribozyme strand + Loop B S-turn strand | G | 19 | A | 20 | G | 21 | A | 22 | A | 23 | A | 24 | C | 25 | A | 26 | C | 27 | * | G | 35 | G | 36 | C | 38 | A | 40 | U | 41 | A | 43 | C | 44 | C | 45 | cWW | cWWa | tSH | tHW | tHW | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GAGAAACAC*GGUACAUUACC | 2 |
| GAGAAACAC*GGUAUAUUACC | 1 |
| GAGAAACAC*GGUCCAUUACC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AGAAACA*GUACAUUAC | 2 |
| AGAAACA*GUAUAUUAC | 1 |
| AGAAACA*GUCCAUUAC | 1 |
- Annotations
-
- (4)
- Basepair signature
- cWW-cWW-tSH-tHW-tHW-L-R-L-cWW-cWW
- Heat map statistics
- Min 0.05 | Avg 0.07 | Max 0.11
Coloring options: