#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3break 4 51-53-4
1 IL_7A0S_0257A0S1.31800Single bulged CX LSU rRNAG938C939G940*C863C864cWWncWW
2 IL_7A0S_0107A0S0.76240Single bulged CX LSU rRNAG558C559G560*C552C553cWWcWW
3 IL_5J7L_3115J7L0.60750Single bulged CDA LSU rRNAG1731C1732G1733*C1727C1728ncWWcWW
4 IL_1DQH_0011DQH0.48020Single bulged CB+ARNA (10-mer)U15C16G17*C3A4cWWcWW
5 IL_5F5H_0025F5H0.50010Single bulged CDRNA (21-mer)G18C19U20*A4C5cWWcWW
6 IL_5F5H_0015F5H0.48690Single bulged CCRNA (21-mer)G18C19U20*A4C5cWWcWW
7 IL_1S03_0021S030.44420Single bulged CA47-MERG9C10G11*C39C40cWW
8 IL_7PMM_0017PMM0.36660Single bulged CDRNA (45mer) containing HP92 of the 23S rRNAU33C34G35*C13A14cWWcWW
9 IL_7KGA_0047KGA0.20960Single bulged CBFlavivirus DB elementA44C45U46*A10U11cWWcWW
10 IL_4WF9_0354WF90.14610Single bulged CX LSU rRNAC1038C1039A1040*U1203G1204cWWcWW
11 IL_8VTW_0348VTW0.00000Single bulged C1A LSU rRNAC994C995A996*U1159G1160cWWcWW
12 IL_5J7L_2765J7L0.10890Single bulged CDA LSU rRNAC994C995A996*U1159G1160cWWcWW
13 IL_7A0S_0327A0S0.13540Single bulged CX LSU rRNAU1005C1006A1007*U1170A1171cWW
14 IL_1DQF_0011DQF0.26790Single bulged CB+ARNA (10-mer)U15C16G17*C3A4cWWcWW
15 IL_1S03_0061S030.30270Single bulged CB47-MERG9C10G11*C39C40cWWcWW
16 IL_6XKO_0016XKO0.39800Single bulged CAPreQ1-III riboswitchG78C79G80*C56C57cWWcWW
17 IL_6ZDP_0016ZDP0.52820Single bulged CBChains: BA1346C1347U1348*A1290U1291cWWcWW
18 IL_7KGA_0017KGA0.53140Single bulged CAFlavivirus DB elementA44C45U46*A10U11cWWcWW
19 IL_3DIL_0013DIL0.62780Single bulged CARNA (174-MER)G12C13G14*C78C79
20 IL_3D0U_0013D0U0.73220Single bulged CALysine Riboswitch RNAG9C10G11*C75C76cWW
21 IL_8C3A_3928C3A0.61790Single bulged CCM SSU rRNAU24C25A26*U598A599cWWcWW
22 IL_4V88_3844V880.54060Single bulged CA6 SSU rRNAU24C25A26*U600A601cWWcWW
23 IL_3IVK_0013IVK0.45950Single bulged CMclass I ligase productG46C47U48*A112C113ncWWcWW
24 IL_8F5G_0028F5G0.42470Single bulged CDRNAG8C9U10*A19C20cWWcWW
25 IL_3HHN_0033HHN0.37520Single bulged CEClass I ligase ribozyme, self-ligation productG46C47U48*A112C113
26 IL_6CK5_0036CK50.53270Single bulged CAGuanidine-I riboswitchU39C40G41*C21A22cWWcWW
27 IL_5KPY_0015KPY0.55660Single bulged CA5-hydroxytryptophan RNA aptamerU25C26G27*C43A44
28 IL_7A0S_0557A0S0.52210Single bulged CX LSU rRNAG1488C1489U1490*A1534C1535
29 IL_3W3S_0013W3S0.59230Single bulged CBSelenocysteine transfer RNAG11C11|||AC12*G23C24cWWcWW
30 IL_3SN2_0013SN20.64290Single bulged CBtransferrin receptor iron regulatory element B RNAU7C8G9*C24A25cWW
31 IL_3SNP_0033SNP0.61700Single bulged CDferritin H IRE RNAG7C8U9*A24C25
32 IL_8C3A_0758C3A0.48350Single bulged C1 LSU rRNAG1774C1775G1776*C1665C1666cWWcWW
33 IL_5TBW_0695TBW0.51220Single bulged C1 LSU rRNAG1778C1779G1780*C1669C1670cWWcWW
34 IL_5TBW_0025TBW0.81820Single bulged C4+1 5.8S rRNAG150C151G152*C7C8cWWcWW
35 IL_8C3A_0028C3A0.76960Single bulged C4+1 5.8S rRNAG150C151G152*C6C7cWWcWW
36 IL_8C3A_1528C3A0.84690Single bulged C4 5.8S rRNAU90C91A92*U67A68cWWcWW
37 IL_4C7O_0034C7O0.81220Single bulged CESRP RNAC31C32G33*C12G13cWWcWW
38 IL_3SN2_0023SN21.19480Single bulged CBtransferrin receptor iron regulatory element B RNAG18C19C20*G13C14cWW
39 IL_1KUQ_0021KUQ1.05020Single bulged CB16S RIBOSOMAL RNA FRAGMENTC46C47C48*G21G22cWWcWW
40 IL_8VTW_1078VTW1.50280Major groove intercalation1A LSU rRNAU2878C2879C2880*G2838G2839cWWcWW

3D structures

Complete motif including flanking bases
SequenceCounts
GCG*CC12
GCU*AC7
UCG*CA6
UCA*UA4
ACU*AU3
CCA*UG3
GCC*GC2
CCG*CG1
CCC*GG1
UCC*GG1
Non-Watson-Crick part of the motif
SequenceCounts
C*40

Release history

Release3.873.883.89
Date2024-08-142024-09-112024-10-09
StatusUpdated, 1 parentExact matchExact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • Single bulged C (39)
  • Major groove intercalation (1)
  • Basepair signature
    cWW-L-cWW
    Heat map statistics
    Min 0.06 | Avg 0.75 | Max 1.90
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