Motif IL_61258.14 Version IL_61258.14 of this group appears in releases 3.91 to 3.94
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | break | 4 | 5 | 1-5 | 3-4 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_7A0S_025 | 7A0S | 1.3076 | 0 | Single bulged C | X | LSU rRNA | G | 938 | C | 939 | G | 940 | * | C | 863 | C | 864 | cWW | ncWW |
| 2 | IL_7A0S_010 | 7A0S | 0.7730 | 0 | Single bulged C | X | LSU rRNA | G | 558 | C | 559 | G | 560 | * | C | 552 | C | 553 | cWW | cWW |
| 3 | IL_5J7L_311 | 5J7L | 0.6003 | 0 | Single bulged C | DA | LSU rRNA | G | 1731 | C | 1732 | G | 1733 | * | C | 1727 | C | 1728 | ncWW | cWW |
| 4 | IL_5KPY_001 | 5KPY | 0.5215 | 0 | Single bulged C | A | 5-hydroxytryptophan RNA aptamer | U | 25 | C | 26 | G | 27 | * | C | 43 | A | 44 | cWW | cWW |
| 5 | IL_3IVK_001 | 3IVK | 0.4647 | 0 | Single bulged C | M | class I ligase product | G | 46 | C | 47 | U | 48 | * | A | 112 | C | 113 | ncWW | cWW |
| 6 | IL_8F5G_002 | 8F5G | 0.4334 | 0 | Single bulged C | D | RNA | G | 8 | C | 9 | U | 10 | * | A | 19 | C | 20 | cWW | cWW |
| 7 | IL_3HHN_003 | 3HHN | 0.3784 | 0 | Single bulged C | E | Class I ligase ribozyme, self-ligation product | G | 46 | C | 47 | U | 48 | * | A | 112 | C | 113 | cWW | cWW |
| 8 | IL_6CK5_003 | 6CK5 | 0.5289 | 0 | Single bulged C | A | Guanidine-I riboswitch | U | 39 | C | 40 | G | 41 | * | C | 21 | A | 22 | cWW | cWW |
| 9 | IL_7A0S_055 | 7A0S | 0.5129 | 0 | Single bulged C | X | LSU rRNA | G | 1488 | C | 1489 | U | 1490 | * | A | 1534 | C | 1535 | cWW | cWW |
| 10 | IL_3W3S_001 | 3W3S | 0.5901 | 0 | Single bulged C | B | Selenocysteine transfer RNA | G | 11 | C | 11|||A | C | 12 | * | G | 23 | C | 24 | cWW | cWW |
| 11 | IL_3SNP_003 | 3SNP | 0.6255 | 0 | Single bulged C | D | IRE | G | 7 | C | 8 | U | 9 | * | A | 24 | C | 25 | cWW | cWW |
| 12 | IL_3SN2_001 | 3SN2 | 0.6479 | 0 | Single bulged C | B | IRE II | U | 7 | C | 8 | G | 9 | * | C | 24 | A | 25 | cWW | cWW |
| 13 | IL_8P9A_297 | 8P9A | 0.5358 | 0 | Single bulged C | AR | LSU rRNA | G | 1778 | C | 1779 | G | 1780 | * | C | 1669 | C | 1670 | cWW | cWW |
| 14 | IL_8P9A_373 | 8P9A | 0.5699 | 0 | Single bulged C | sR | SSU rRNA | U | 24 | C | 25 | A | 26 | * | U | 600 | A | 601 | cWW | cWW |
| 15 | IL_8C3A_392 | 8C3A | 0.6379 | 0 | Single bulged C | CM | SSU rRNA | U | 24 | C | 25 | A | 26 | * | U | 598 | A | 599 | cWW | cWW |
| 16 | IL_7PMM_001 | 7PMM | 0.4022 | 0 | Single bulged C | D | RNA (45mer) containing HP92 of the 23S rRNA | U | 33 | C | 34 | G | 35 | * | C | 13 | A | 14 | cWW | cWW |
| 17 | IL_1DQH_001 | 1DQH | 0.4698 | 0 | Single bulged C | B+A | RNA (10-mer) | U | 15 | C | 16 | G | 17 | * | C | 3 | A | 4 | cWW | cWW |
| 18 | IL_5F5H_002 | 5F5H | 0.4918 | 0 | Single bulged C | D | RNA (21-mer) | G | 18 | C | 19 | U | 20 | * | A | 4 | C | 5 | cWW | cWW |
| 19 | IL_5F5H_001 | 5F5H | 0.4756 | 0 | Single bulged C | C | RNA (21-mer) | G | 18 | C | 19 | U | 20 | * | A | 4 | C | 5 | cWW | cWW |
| 20 | IL_1S03_002 | 1S03 | 0.4458 | 0 | Single bulged C | A | 47-MER | G | 9 | C | 10 | G | 11 | * | C | 39 | C | 40 | cWW | cWW |
| 21 | IL_4WF9_035 | 4WF9 | 0.1704 | 0 | Single bulged C | X | LSU rRNA | C | 1038 | C | 1039 | A | 1040 | * | U | 1203 | G | 1204 | cWW | cWW |
| 22 | IL_5J7L_276 | 5J7L | 0.1132 | 0 | Single bulged C | DA | LSU rRNA | C | 994 | C | 995 | A | 996 | * | U | 1159 | G | 1160 | cWW | cWW |
| 23 | IL_9DFE_034 | 9DFE | 0.0000 | 0 | Single bulged C | 1A | LSU rRNA | C | 994 | C | 995 | A | 996 | * | U | 1159 | G | 1160 | cWW | cWW |
| 24 | IL_7A0S_032 | 7A0S | 0.1265 | 0 | Single bulged C | X | LSU rRNA | U | 1005 | C | 1006 | A | 1007 | * | U | 1170 | A | 1171 | cWW | cWW |
| 25 | IL_1DQF_001 | 1DQF | 0.2519 | 0 | Single bulged C | B+A | RNA (10-mer) | U | 15 | C | 16 | G | 17 | * | C | 3 | A | 4 | cWW | cWW |
| 26 | IL_1S03_006 | 1S03 | 0.2971 | 0 | Single bulged C | B | 47-MER | G | 9 | C | 10 | G | 11 | * | C | 39 | C | 40 | cWW | cWW |
| 27 | IL_6XKO_001 | 6XKO | 0.3790 | 0 | Single bulged C | A | PreQ1-III riboswitch | G | 78 | C | 79 | G | 80 | * | C | 56 | C | 57 | cWW | cWW |
| 28 | IL_6ZDP_001 | 6ZDP | 0.4953 | 0 | Single bulged C | B | Chains: B | A | 1346 | C | 1347 | U | 1348 | * | A | 1290 | U | 1291 | cWW | cWW |
| 29 | IL_8P9A_231 | 8P9A | 0.7433 | 0 | Single bulged C | AT+AR | 5.8S rRNA | G | 150 | C | 151 | G | 152 | * | C | 7 | C | 8 | cWW | cWW |
| 30 | IL_3DIL_001 | 3DIL | 0.6151 | 0 | Single bulged C | A | Lysine riboswitch | G | 12 | C | 13 | G | 14 | * | C | 78 | C | 79 | cWW | cWW |
| 31 | IL_3D0U_001 | 3D0U | 0.7333 | 0 | Single bulged C | A | Lysine riboswitch | G | 9 | C | 10 | G | 11 | * | C | 75 | C | 76 | cWW | cWW |
| 32 | IL_4C7O_003 | 4C7O | 0.8098 | 0 | Single bulged C | E | SRP RNA | C | 31 | C | 32 | G | 33 | * | C | 12 | G | 13 | cWW | cWW |
| 33 | IL_3SN2_002 | 3SN2 | 1.1555 | 0 | Single bulged C | B | IRE II | G | 18 | C | 19 | C | 20 | * | G | 13 | C | 14 | cWW | cWW |
| 34 | IL_1KUQ_002 | 1KUQ | 1.0063 | 0 | Single bulged C | B | 16S RIBOSOMAL RNA FRAGMENT | C | 46 | C | 47 | C | 48 | * | G | 21 | G | 22 | cWW | cWW |
| 35 | IL_9DFE_107 | 9DFE | 1.4563 | 0 | Major groove intercalation | 1A | LSU rRNA | U | 2878 | C | 2879 | C | 2880 | * | G | 2838 | G | 2839 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GCG*CC | 10 |
| GCU*AC | 7 |
| UCG*CA | 6 |
| UCA*UA | 3 |
| CCA*UG | 3 |
| GCC*GC | 2 |
| ACU*AU | 1 |
| CCG*CG | 1 |
| CCC*GG | 1 |
| UCC*GG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| C* | 35 |
- Annotations
-
- Single bulged C (34)
- Major groove intercalation (1)
- Basepair signature
- cWW-L-cWW
- Heat map statistics
- Min 0.06 | Avg 0.76 | Max 1.90
Coloring options: