IL_61258.15

#S	Loop id	PDB	Disc	Annotation	Chain(s)	Standardized name for chain		1		2		3	break		4		5	1-5	3-4
1	IL_9DFE_107	9DFE	1.4563	Major groove intercalation	1A	LSU rRNA	U	2878	C	2879	C	2880	*	G	2838	G	2839	cWW	cWW
2	IL_1KUQ_002	1KUQ	1.0063	Single bulged C	B	16S RIBOSOMAL RNA FRAGMENT	C	46	C	47	C	48	*	G	21	G	22	cWW	cWW
3	IL_3SN2_002	3SN2	1.1555	Single bulged C	B	IRE II	G	18	C	19	C	20	*	G	13	C	14	cWW	cWW
4	IL_4C7O_003	4C7O	0.8098	Single bulged C	E	SRP RNA	C	31	C	32	G	33	*	C	12	G	13	cWW	cWW
5	IL_3D0U_001	3D0U	0.7333	Single bulged C	A	Lysine riboswitch	G	9	C	10	G	11	*	C	75	C	76	cWW	cWW
6	IL_3DIL_001	3DIL	0.6151	Single bulged C	A	Lysine riboswitch	G	12	C	13	G	14	*	C	78	C	79	cWW	cWW
7	IL_8CRE_151	8CRE	0.7937	Single bulged C (H)	4	5.8S rRNA	U	90	C	91	A	92	*	U	67	A	68	cWW	cWW
8	IL_8CRE_002	8CRE	0.7448	Single bulged C (H)	4+1	5.8S rRNA	G	150	C	151	G	152	*	C	6	C	7	cWW	cWW
9	IL_8P9A_231	8P9A	0.7433	Single bulged C	AT+AR	5.8S rRNA	G	150	C	151	G	152	*	C	7	C	8	cWW	cWW
10	IL_6ZDP_001	6ZDP	0.4953	Single bulged C	B	Chains: B	A	1346	C	1347	U	1348	*	A	1290	U	1291	cWW	cWW
11	IL_6XKO_001	6XKO	0.3790	Single bulged C	A	PreQ1-III riboswitch	G	78	C	79	G	80	*	C	56	C	57	cWW	cWW
12	IL_7KGA_001	7KGA	0.5234	Single bulged C	A	Flavivirus DB element	A	44	C	45	U	46	*	A	10	U	11	cWW	cWW
13	IL_1S03_002	1S03	0.4458	Single bulged C	A	47-MER	G	9	C	10	G	11	*	C	39	C	40	cWW	cWW
14	IL_5F5H_001	5F5H	0.4756	Single bulged C	C	RNA (21-mer)	G	18	C	19	U	20	*	A	4	C	5	cWW	cWW
15	IL_5F5H_002	5F5H	0.4918	Single bulged C	D	RNA (21-mer)	G	18	C	19	U	20	*	A	4	C	5	cWW	cWW
16	IL_1DQH_001	1DQH	0.4698	Single bulged C	B+A	RNA (10-mer)	U	15	C	16	G	17	*	C	3	A	4	cWW	cWW
17	IL_7PMM_001	7PMM	0.4022	Single bulged C	D	RNA (45mer) containing HP92 of the 23S rRNA	U	33	C	34	G	35	*	C	13	A	14	cWW	cWW
18	IL_1DQF_001	1DQF	0.2519	Single bulged C	B+A	RNA (10-mer)	U	15	C	16	G	17	*	C	3	A	4	cWW	cWW
19	IL_1S03_006	1S03	0.2971	Single bulged C	B	47-MER	G	9	C	10	G	11	*	C	39	C	40	cWW	cWW
20	IL_4WF9_035	4WF9	0.1704	Single bulged C	X	LSU rRNA	C	1038	C	1039	A	1040	*	U	1203	G	1204	cWW	cWW
21	IL_7A0S_032	7A0S	0.1265	Single bulged C	X	LSU rRNA	U	1005	C	1006	A	1007	*	U	1170	A	1171	cWW	cWW
22	IL_5J7L_276	5J7L	0.1132	Single bulged C	DA	LSU rRNA	C	994	C	995	A	996	*	U	1159	G	1160	cWW	cWW
23	IL_9DFE_034	9DFE	0.0000	Single bulged C	1A	LSU rRNA	C	994	C	995	A	996	*	U	1159	G	1160	cWW	cWW
24	IL_7KGA_004	7KGA	0.2057	Single bulged C	B	Flavivirus DB element	A	44	C	45	U	46	*	A	10	U	11	cWW	cWW
25	IL_9DE7_001	9DE7	0.4087		A	RNA (58-MER)	U	4	C	5	U	6	*	A	55	A	56	cWW	cWW
26	IL_5KPY_001	5KPY	0.5215	Single bulged C	A	5-hydroxytryptophan RNA aptamer	U	25	C	26	G	27	*	C	43	A	44	cWW	cWW
27	IL_3IVK_001	3IVK	0.4647	Single bulged C	M	class I ligase product	G	46	C	47	U	48	*	A	112	C	113	ncWW	cWW
28	IL_8F5G_002	8F5G	0.4334	Single bulged C	D	RNA	G	8	C	9	U	10	*	A	19	C	20	cWW	cWW
29	IL_3HHN_003	3HHN	0.3784	Single bulged C	E	Class I ligase ribozyme, self-ligation product	G	46	C	47	U	48	*	A	112	C	113	cWW	cWW
30	IL_6CK5_003	6CK5	0.5289	Single bulged C	A	Guanidine-I riboswitch	U	39	C	40	G	41	*	C	21	A	22	cWW	cWW
31	IL_7A0S_055	7A0S	0.5129	Single bulged C	X	LSU rRNA	G	1488	C	1489	U	1490	*	A	1534	C	1535	cWW	cWW
32	IL_3W3S_001	3W3S	0.5901	Single bulged C	B	Selenocysteine transfer RNA	G	11	C	11\|\|\|A	C	12	*	G	23	C	24	cWW	cWW
33	IL_3SNP_003	3SNP	0.6255	Single bulged C	D	IRE	G	7	C	8	U	9	*	A	24	C	25	cWW	cWW
34	IL_3SN2_001	3SN2	0.6479	Single bulged C	B	IRE II	U	7	C	8	G	9	*	C	24	A	25	cWW	cWW
35	IL_8P9A_297	8P9A	0.5358	Single bulged C	AR	LSU rRNA	G	1778	C	1779	G	1780	*	C	1669	C	1670	cWW	cWW
36	IL_8CRE_074	8CRE	0.4841	Single bulged C (H)	1	LSU rRNA	G	1774	C	1775	G	1776	*	C	1665	C	1666	cWW	cWW
37	IL_8P9A_373	8P9A	0.5699	Single bulged C	sR	SSU rRNA	U	24	C	25	A	26	*	U	600	A	601	cWW	cWW
38	IL_8CRE_390	8CRE	0.6567	Single bulged C (H)	CM	SSU rRNA	U	24	C	25	A	26	*	U	598	A	599	cWW	cWW
39	IL_7A0S_010	7A0S	0.7730	Single bulged C	X	LSU rRNA	G	558	C	559	G	560	*	C	552	C	553	cWW	cWW
40	IL_5J7L_311	5J7L	0.6003	Single bulged C	DA	LSU rRNA	G	1731	C	1732	G	1733	*	C	1727	C	1728	ncWW	cWW
41	IL_7A0S_025	7A0S	1.3076	Single bulged C	X	LSU rRNA	G	938	C	939	G	940	*	C	863	C	864	cWW	ncWW

3D structures

Complete motif including flanking bases

Sequence	Counts
GCG*CC	12
GCU*AC	7
UCG*CA	6
UCA*UA	4
ACU*AU	3
CCA*UG	3
GCC*GC	2
UCC*GG	1
CCC*GG	1
CCG*CG	1
UCU*AA	1

Non-Watson-Crick part of the motif

Sequence	Counts
C*	41

Release history

Release	3.95	3.96	3.97	3.98	3.99
Date	2025-03-26	2025-04-23	2025-05-21	2025-06-18	2025-07-16
Status	Updated, 1 parent	Exact match	Exact match	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Motif IL_61258.15 Version IL_61258.15 of this group appears in releases 3.95 to 3.99 Download Csv Json

3D structures

Complete motif including flanking bases

Non-Watson-Crick part of the motif

Release history

Parent motifs

Children motifs

Motif IL_61258.15 Version IL_61258.15 of this group appears in releases 3.95 to 3.99

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Csv

Json