Motif IL_61370.1 Version IL_61370.1 of this group appears in releases 4.0 to 4.5
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 1-3 | 1-7 | 4-7 | 5-6 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4LFB_039 | 4LFB | 0.5974 | 0 | Minor groove platform | A | SSU rRNA | G | 993 | A | 994 | C | 995 | A | 996 | U | 997 | * | A | 1044 | C | 1045 | cWW | cWS | cWW | |
| 2 | IL_8B0X_042 | 8B0X | 0.5579 | 0 | A | SSU rRNA | G | 993 | A | 994 | C | 995 | A | 996 | U | 997 | * | A | 1044 | C | 1045 | cWW | ncWS | cWW | ||
| 3 | IL_8B0X_040 | 8B0X | 0.0000 | 1 | Minor groove platform (H) | A | SSU rRNA | U | 1380 | U | 1381 | C | 1382 | C | 1383 | C | 1384 | * | G | 933 | A | 935 | cSH | cWW | cWS | cWW |
| 4 | IL_4LFB_037 | 4LFB | 0.0735 | 1 | Minor groove platform | A | SSU rRNA | U | 1380 | U | 1381 | C | 1382 | C | 1383 | C | 1384 | * | G | 933 | A | 935 | cWW | cWS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GACAU*AC | 2 |
| UUCCC*GCA | 2 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| ACA* | 2 |
| UCC*C | 2 |
- Annotations
-
- Minor groove platform (2)
- Minor groove platform (H) (1)
- (1)
- Basepair signature
- cWW-cWS-L-cWW-L
- Heat map statistics
- Min 0.07 | Avg 0.32 | Max 0.61
Coloring options: