Motif IL_61831.1 Version IL_61831.1 of this group appears in releases 0.5 to 0.5
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | break | 3 | 4 | 5 | 1-4 | 1-5 | 2-3 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_2AW7_016 | 2AW7 | 0.0000 | 2 | A | 16S ribosomal RNA | G | 292 | G | 293 | * | U | 304 | G | 305 | C | 308 | cWW | cWW | ||
| 2 | IL_3PYO_087 | 3PYO | 0.6958 | 1 | A | 23S ribosomal RNA | U | 2522 | G | 2523 | * | C | 2540 | A | 2541 | G | 2543 | ntHS | cWW | cWW | |
| 3 | IL_1S72_087 | 1S72 | 0.7132 | 1 | Major groove platform with intercalation (H) | 0 | LSU rRNA | U | 2557 | G | 2558 | * | C | 2575 | A | 2576 | G | 2578 | ntHS | cWW | cWW |
| 4 | IL_2QBG_098 | 2QBG | 0.7867 | 1 | B | 23S rRNA | U | 2522 | G | 2523 | * | C | 2540 | A | 2541 | G | 2543 | ntHS | cWW | cWW | |
| 5 | IL_2ZJR_092 | 2ZJR | 0.8139 | 1 | Major groove platform with intercalation (H) | X | LSU rRNA | U | 2501 | G | 2502 | * | C | 2519 | A | 2520 | G | 2522 | tHS | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UG*CAAG | 4 |
| GG*UGACC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| *AA | 4 |
| *GAC | 1 |
Release history
| Release | 0.5 |
|---|---|
| Date | 2011-12-08 |
| Status | New id, 1 parent |
Parent motifs
| Parent motif | Common motif instances | Only in IL_61831.1 | Only in the parent motif |
|---|---|---|---|
| IL_62089.1 Compare | IL_2ZJR_092, IL_1S72_087 | IL_2QBG_098, IL_2AW7_016, IL_3PYO_087 | IL_2ZJR_023, IL_1S72_062, IL_2ZJR_063, IL_3F1H_064, IL_3F1H_096 |
Children motifs
| Child motif | Common motif instances | Only in IL_61831.1 | Only in the child motif |
|---|---|---|---|
| IL_99515.1 Compare | IL_2ZJR_092, IL_1S72_087, IL_2QBG_098 | IL_2AW7_016, IL_3PYO_087 | IL_2ZJR_023, IL_3U5H_117, IL_3U5H_110, IL_3U5H_085, IL_4A1B_114, IL_1S72_062, IL_4A1B_081, IL_3UXR_097 |
| IL_98421.1 Compare | IL_2AW7_016 | IL_2ZJR_092, IL_1S72_087, IL_3PYO_087, IL_2QBG_098 | IL_1FJG_013, IL_3U5H_123 |
- Annotations
-
- (3)
- Major groove platform with intercalation (H) (2)
- Basepair signature
- Heat map statistics
- Min 0.09 | Avg 0.31 | Max 0.81
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