Motif IL_62504.1 Version IL_62504.1 of this group appears in releases 1.17 to 1.17
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | break | 7 | 8 | 9 | 10 | 11 | 1-11 | 2-10 | 3-9 | 4-8 | 5-8 | 6-7 | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_2AW7_066 | 2AW7 | 0.2753 | 0 | A | 16S ribosomal RNA | A | 1430 | A | 1431 | G | 1432 | A | 1433 | A | 1434 | G | 1435 | * | C | 1466 | C | 1467 | A | 1468 | C | 1469 | U | 1470 | cWW | tSH | tSH | ntHS | cWW | |
| 2 | IL_4A1B_030 | 4A1B | 0.0000 | 0 | 1 | 26S RRNA | U | 764 | A | 765 | G | 766 | C | 767 | A | 768 | G | 769 | * | C | 751 | C | 752 | A | 753 | A | 754 | G | 755 | cWW | tSH | tSH | ntHS | cWW | |
| 3 | IL_1VWW_146 | 1VWW | 0.9747 | 2 | 5 | 28S ribosomal RNA | C | 4662 | G | 4663 | A | 4664 | A | 4665 | G | 4666 | C | 4667 | * | G | 4631 | U | 4632 | G | 4633 | A | 4635 | G | 4637 | cWW | ncWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| AAGAAG*CCACU | 1 |
| UAGCAG*CCAAG | 1 |
| GUGUAUG*CGAAGC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AGAA*CAC | 1 |
| AGCA*CAA | 1 |
| UGUAU*GAAG | 1 |
Release history
| Release | 1.17 |
|---|---|
| Date | 2014-09-04 |
| Status | New id, 2 parents |
Parent motifs
| Parent motif | Common motif instances | Only in IL_62504.1 | Only in the parent motif |
|---|---|---|---|
| IL_25541.1 Compare | IL_4A1B_030 | IL_1VWW_146, IL_2AW7_066 | IL_1VW3_086 |
| IL_46151.1 Compare | IL_2AW7_066 | IL_1VWW_146, IL_4A1B_030 |
Children motifs
| Child motif | Common motif instances | Only in IL_62504.1 | Only in the child motif |
|---|---|---|---|
| IL_62504.2 Compare | IL_2AW7_066, IL_4A1B_030 | IL_1VWW_146 |
- Annotations
-
- (3)
- Basepair signature
- cWW-tSH-tSH-L-R-L-cWW
- Heat map statistics
- Min 0.28 | Avg 0.50 | Max 0.99
Coloring options: