Motif IL_62585.1 Version IL_62585.1 of this group appears in releases 2.0 to 2.0
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 8 | 1-8 | 2-7 | 3-6 | 3-7 | 4-5 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_1DUQ_007 | 1DUQ | 0.2549 | 1 | G+H | THE REV BINDING ELEMENT | G | 404 | G | 405 | G | 406 | C | 407 | * | G | 423 | G | 424 | A | 426 | C | 427 | cWW | cWH | cWW | ||
| 2 | IL_1CSL_001 | 1CSL | 0.0000 | 1 | A+B | RNA (13-mer) + RNA (15-mer) | G | 46 | G | 47 | G | 48 | C | 49 | * | G | 70 | G | 71 | A | 73 | C | 74 | cWW | cWW | cWH | cWW | |
| 3 | IL_3J79_067 | 3J79 | 0.6477 | 0 | A | LSU rRNA | C | 1996 | G | 1997 | A | 1998 | A | 1999 | * | U | 1826 | C | 1827 | G | 1828 | G | 1829 | cWW | ncHW | cWW | cWW | |
| 4 | IL_4R0D_004 | 4R0D | 0.6946 | 0 | A | Group II catalytic intron | C | 80 | G | 81 | U | 82 | A | 83 | * | U | 96 | A | 97 | G | 98 | G | 99 | cWW | cHW | ncWW | cWW | |
| 5 | IL_3J7A_035 | 3J7A | 0.7263 | 1 | A | SSU rRNA | U | 877 | G | 878 | A | 879 | A | 880 | * | U | 922 | U | 923 | C | 925 | G | 926 | ncWW | ncWW | ncWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GGGC*GGUAC | 2 |
| CGAA*UCGG | 1 |
| CGUA*UAGG | 1 |
| UGAA*UUACG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GG*GUA | 2 |
| GA*CG | 1 |
| GU*AG | 1 |
| GA*UAC | 1 |
Release history
| Release | 2.0 |
|---|---|
| Date | 2017-04-24 |
| Status | New id, 2 parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (5)
- Basepair signature
- cWW-cHW-cWH-cWW
- Heat map statistics
- Min 0.25 | Avg 0.49 | Max 0.74
Coloring options: