Motif IL_62661.2 Version IL_62661.2 of this group appears in releases 0.7 to 0.12
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 8 | 9 | 10 | 1-10 | 2-8 | 2-9 | 4-7 | 5-6 | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4A1B_008 | 4A1B | 0.5607 | 0 | 1 | 26S RRNA | U | 248 | G | 249 | U | 250 | A | 251 | A | 252 | * | U | 167 | G | 168 | A | 169 | A | 170 | A | 171 | cWW | ntSH | cWW | |||
| 2 | IL_3V2F_071 | 3V2F | 0.0000 | 0 | A | 23S Ribosomal RNA | U | 1851 | C | 1852 | A | 1853 | A | 1854 | G | 1855 | * | C | 1887 | G | 1888 | A | 1889 | A | 1890 | G | 1891 | cWW | tSH | tHS | cWW | ||
| 3 | IL_2ZJR_070 | 2ZJR | 0.3746 | 0 | X | LSU rRNA | U | 1843 | C | 1844 | A | 1845 | A | 1846 | G | 1847 | * | U | 1870 | G | 1871 | A | 1872 | A | 1873 | G | 1874 | cWW | ntSH | ncWW | |||
| 4 | IL_2ZJR_048 | 2ZJR | 0.6485 | 0 | X | LSU rRNA | C | 1364 | U | 1365 | A | 1366 | A | 1367 | G | 1368 | * | C | 1389 | G | 1390 | A | 1391 | U | 1392 | G | 1393 | cWW | tWH | tHS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UGUAA*UGAAA | 1 |
| UCAAG*CGAAG | 1 |
| UCAAG*UGAAG | 1 |
| CUAAG*CGAUG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CAA*GAA | 2 |
| GUA*GAA | 1 |
| UAA*GAU | 1 |
Release history
| Release | 0.7 | 0.8 | 0.9 | 0.10 | 0.11 | 0.12 |
|---|---|---|---|---|---|---|
| Date | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 |
| Status | Updated, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
| Parent motif | Common motif instances | Only in IL_62661.2 | Only in the parent motif |
|---|---|---|---|
| IL_62661.1 Compare | IL_2ZJR_048, IL_2ZJR_070, IL_4A1B_008 | IL_3V2F_071 | IL_3UXR_071 |
Children motifs
| Child motif | Common motif instances | Only in IL_62661.2 | Only in the child motif |
|---|---|---|---|
| IL_38960.1 Compare | IL_2ZJR_070, IL_2ZJR_048, IL_3V2F_071 | IL_4A1B_008 | IL_3V2F_098, IL_1S72_089, IL_2ZJR_094 |
| IL_74876.2 Compare | IL_4A1B_008 | IL_2ZJR_070, IL_2ZJR_048, IL_3V2F_071 | IL_3OWZ_004, IL_3OWZ_008 |
- Annotations
- Basepair signature
- cWW-tSH-L-R-tHS-cWW
- Heat map statistics
- Min 0.37 | Avg 0.49 | Max 0.87
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