Motif IL_62718.1 Version IL_62718.1 of this group appears in releases 0.1 to 0.6
#S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 8 | 9 | 10 | 11 | 1-11 | 2-10 | 3-9 | 4-7 | 5-6 | 8-9 | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | IL_1FJG_018 | 1FJG | 0.0000 | 0 | 6x5 Sarcin-Ricin; G-bulge (H) | A | SSU rRNA | G | 446 | G | 447 | A | 448 | C | 449 | G | 450 | * | C | 483 | G | 484 | G | 485 | U | 486 | A | 487 | C | 488 | cWW | tSH | tHW | cWW | cSH | |
2 | IL_3G78_013 | 3G78 | 0.4024 | 0 | A | Group II catalytic intron D1-D4-1 | G | 316 | G | 317 | A | 318 | A | 319 | G | 320 | * | U | 298 | A | 299 | G | 300 | U | 301 | A | 302 | C | 303 | cWW | tSH | tHW | tHH | cWW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
GGACG*CGGUAC | 1 |
GGAAG*UAGUAC | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
GAC*GGUA | 1 |
GAA*AGUA | 1 |
Release history
Release | 0.1 | 0.2 | 0.3 | 0.4 | 0.5 | 0.6 |
---|---|---|---|---|---|---|
Date | 2011-12-08 | 2011-12-08 | 2011-12-08 | 2011-12-08 | 2011-12-08 | 2012-04-02 |
Status | New id, no parents | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
Child motif | Common motif instances | Only in IL_62718.1 | Only in the child motif |
---|---|---|---|
IL_41849.1 Compare | IL_3G78_013 | IL_1FJG_018 | |
IL_87548.1 Compare | IL_1FJG_018 | IL_3G78_013 | IL_2QBG_067 |
- Annotations
-
- 6x5 Sarcin-Ricin; G-bulge (H) (1)
- (1)
- Basepair signature
- 11_cWW-tSH-tHW-tHH-cWW---cSH
- Heat map statistics
- Min 0.40 | Avg 0.20 | Max 0.40
Coloring options: