#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3 4break 5 6 7 81-82-73-64-5
1 IL_2QBZ_0032QBZ0.00001XM-Box RNA, ykoK riboswitch aptamerU28G29A30G31*U153A154A156G157cWWtSHtHScWW
2 IL_3DIR_0023DIR0.51510ARNA (174-MER)C70G71A72G73*C19G20A21G22cWWtSHtHScWW
3 IL_3F1H_0863F1H0.51670A23S RRNAC2350G2351A2352G2353*C2364G2365A2366G2367cWWntSHntHScWW
4 IL_1S72_0981S720.531500 LSU rRNAC2873G2874A2875G2876*C2881G2882A2883G2884cWWtSHtHScWW
5 IL_1SAQ_0021SAQ0.63910Double shearedA+BRNA (8-mer)C103G104A105G106*C111G112A113G114cWWtSHtHScWW
6 IL_2ZJR_0572ZJR0.56650X LSU rRNAU1530C1531A1532G1533*C1491A1492A1493G1494cWWtSHntHScWW

3D structures

Complete motif including flanking bases
SequenceCounts
CGAG*CGAG4
UGAG*UAAAG1
UCAG*CAAG1
Non-Watson-Crick part of the motif
SequenceCounts
GA*GA4
GA*AAA1
CA*AA1

Release history

Release0.3
Date2011-12-08
StatusNew id, 2 parents

Parent motifs

Children motifs

Child motifCommon motif instancesOnly in IL_63091.1Only in the child motif
IL_05994.1
Compare
IL_2QBZ_003, IL_2ZJR_057, IL_3F1H_086, IL_1SAQ_002, IL_1S72_098, IL_3DIR_002IL_2ZJR_082, IL_1SA9_002, IL_1FJG_059, IL_3D0U_002, IL_1SA9_001
Annotations
  • (5)
  • Double sheared (1)
  • Basepair signature
    Heat map statistics
    Min 0.18 | Avg 0.34 | Max 0.64
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