Motif IL_63091.1 Version IL_63091.1 of this group appears in releases 0.3 to 0.3
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 8 | 1-8 | 2-7 | 3-6 | 4-5 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_2QBZ_003 | 2QBZ | 0.0000 | 1 | X | M-box riboswitch (ykoK leader) | U | 28 | G | 29 | A | 30 | G | 31 | * | U | 153 | A | 154 | A | 156 | G | 157 | cWW | tSH | tHS | cWW | |
| 2 | IL_3DIR_002 | 3DIR | 0.5151 | 0 | A | Lysine riboswitch | C | 70 | G | 71 | A | 72 | G | 73 | * | C | 19 | G | 20 | A | 21 | G | 22 | cWW | tSH | tHS | cWW | |
| 3 | IL_3F1H_086 | 3F1H | 0.5167 | 0 | A | LSU rRNA | C | 2350 | G | 2351 | A | 2352 | G | 2353 | * | C | 2364 | G | 2365 | A | 2366 | G | 2367 | cWW | ntSH | ntHS | cWW | |
| 4 | IL_1S72_098 | 1S72 | 0.5315 | 0 | 0 | LSU rRNA | C | 2873 | G | 2874 | A | 2875 | G | 2876 | * | C | 2881 | G | 2882 | A | 2883 | G | 2884 | cWW | tSH | tHS | cWW | |
| 5 | IL_1SAQ_002 | 1SAQ | 0.6391 | 0 | Double sheared | A+B | RNA (8-mer) | C | 103 | G | 104 | A | 105 | G | 106 | * | C | 111 | G | 112 | A | 113 | G | 114 | cWW | tSH | tHS | cWW |
| 6 | IL_2ZJR_057 | 2ZJR | 0.5665 | 0 | X | LSU rRNA | U | 1530 | C | 1531 | A | 1532 | G | 1533 | * | C | 1491 | A | 1492 | A | 1493 | G | 1494 | cWW | tSH | ntHS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CGAG*CGAG | 4 |
| UGAG*UAAAG | 1 |
| UCAG*CAAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GA*GA | 4 |
| GA*AAA | 1 |
| CA*AA | 1 |
Release history
| Release | 0.3 |
|---|---|
| Date | 2011-12-08 |
| Status | New id, 2 parents |
Parent motifs
| Parent motif | Common motif instances | Only in IL_63091.1 | Only in the parent motif |
|---|---|---|---|
| IL_48375.1 Compare | IL_2QBZ_003, IL_3DIR_002, IL_3F1H_086 | IL_2ZJR_057, IL_1S72_098, IL_1SAQ_002 | |
| IL_01643.1 Compare | IL_2ZJR_057, IL_1S72_098, IL_1SAQ_002 | IL_2QBZ_003, IL_3F1H_086, IL_3DIR_002 | IL_3BNP_003, IL_3BNP_002, IL_2ZJR_082, IL_3D0U_002, IL_1FJG_059, IL_1SA9_002, IL_1SA9_001, IL_3F1H_044, IL_3BNQ_011, IL_3BNQ_005 |
Children motifs
| Child motif | Common motif instances | Only in IL_63091.1 | Only in the child motif |
|---|---|---|---|
| IL_05994.1 Compare | IL_2QBZ_003, IL_2ZJR_057, IL_3F1H_086, IL_1SAQ_002, IL_1S72_098, IL_3DIR_002 | IL_2ZJR_082, IL_1SA9_002, IL_1FJG_059, IL_3D0U_002, IL_1SA9_001 |
- Annotations
-
- (5)
- Double sheared (1)
- Basepair signature
- Heat map statistics
- Min 0.18 | Avg 0.34 | Max 0.64
Coloring options: