Motif IL_63596.10 Version IL_63596.10 of this group appears in releases 3.91 to 3.94
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 1-3 | 1-7 | 2-4 | 2-6 | 3-7 | 4-7 | 5-6 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_8P9A_290 | 8P9A | 0.3153 | 1 | C-loop | AR | LSU rRNA | U | 1501 | C | 1502 | A | 1503 | A | 1504 | C | 1505 | * | G | 1513 | A | 1515 | ncWW | tWH | cWS | cWW | |||
| 2 | IL_5J7L_291 | 5J7L | 0.2565 | 1 | C-loop | DA | LSU rRNA | C | 1319 | C | 1320 | A | 1321 | A | 1322 | C | 1323 | * | G | 1331 | G | 1333 | cWW | ncSH | tWH | cWS | cWW | ||
| 3 | IL_9DFE_050 | 9DFE | 0.2583 | 1 | C-loop | 1A | LSU rRNA | G | 1319 | C | 1320 | A | 1321 | A | 1322 | U | 1323 | * | A | 1331 | C | 1333 | cWW | tWH | cWS | cWW | |||
| 4 | IL_4V9F_051 | 4V9F | 0.1860 | 1 | C-loop | 0 | LSU rRNA | G | 1425 | C | 1426 | A | 1427 | C | 1428 | U | 1429 | * | A | 1437 | C | 1439 | cWW | cSH | tWH | cWS | cWW | ||
| 5 | IL_4V9F_093 | 4V9F | 0.1749 | 1 | C-loop | 0 | LSU rRNA | C | 2717 | C | 2718 | A | 2719 | C | 2720 | U | 2721 | * | A | 2761 | G | 2763 | cWW | cSH | tWH | cWS | cWW | ||
| 6 | IL_4WF9_101 | 4WF9 | 0.1132 | 1 | C-loop | X | LSU rRNA | C | 2707 | C | 2708 | U | 2709 | C | 2710 | U | 2711 | * | A | 2752 | G | 2754 | cWW | ncSH | tWH | ntHS | cWS | cWW | |
| 7 | IL_7A0S_095 | 7A0S | 0.1091 | 1 | C-loop | X | LSU rRNA | C | 2659 | C | 2660 | G | 2661 | C | 2662 | U | 2663 | * | A | 2705 | G | 2707 | cWW | ncSH | tWH | cWS | cWW | ||
| 8 | IL_5J7L_347 | 5J7L | 0.0000 | 1 | C-loop | DA | LSU rRNA | U | 2680 | C | 2681 | A | 2682 | C | 2683 | U | 2684 | * | A | 2725 | A | 2727 | ncSH | cWW | cSH | tWH | cWS | cWW | |
| 9 | IL_9DFE_103 | 9DFE | 0.1191 | 1 | C-loop | 1A | LSU rRNA | C | 2680 | C | 2681 | U | 2682 | C | 2683 | U | 2684 | * | A | 2725 | G | 2727 | cWW | cSH | tWH | tHS | cWS | cWW | |
| 10 | IL_8HNT_002 | 8HNT | 0.1386 | 1 | C-loop | B | sgRNA | G | 87 | C | 88 | U | 89 | C | 90 | U | 91 | * | A | 120 | C | 122 | ncSH | cWW | ncSH | tWH | cWS | cWW | |
| 11 | IL_1KOG_007 | 1KOG | 0.1286 | 1 | C-loop | O | Threonyl-tRNA synthetase mRNA | C | 96 | C | 97 | A | 98 | C | 99 | U | 100 | * | A | 74 | G | 76 | ncSH | cWW | cSH | tWH | cWS | cWW | |
| 12 | IL_8C3A_449 | 8C3A | 0.1867 | 2 | C-loop | CM | SSU rRNA | U | 1604 | C | 1605 | C | 1606 | C | 1607 | U | 1608 | * | A | 1142 | A | 1145 | cSH | cWW | ncSH | tWH | cWS | cWW | |
| 13 | IL_8P9A_431 | 8P9A | 0.1787 | 2 | C-loop | sR | SSU rRNA | U | 1617 | C | 1618 | C | 1619 | C | 1620 | U | 1621 | * | A | 1157 | A | 1160 | cWW | tWH | cWS | cWW | |||
| 14 | IL_4MGN_001 | 4MGN | 0.1769 | 1 | C-loop | A | glyQS T box riboswitch | C | 29 | C | 30 | U | 31 | C | 32 | U | 33 | * | A | 73 | G | 75 | cWW | ncSH | ntWH | ntHS | cWS | cWW | |
| 15 | IL_4JRC_003 | 4JRC | 0.1919 | 1 | C-loop | B | Distal Stem I region of the glyQS T box leader RNA | C | 29 | C | 30 | U | 31 | C | 32 | U | 33 | * | A | 73 | G | 75 | cWW | cSH | tWH | tHS | cWS | cWW | |
| 16 | IL_6XJQ_001 | 6XJQ | 0.1634 | 1 | C-loop | A | Self-alkylating ribozyme (58-MER) | G | 5 | C | 6 | U | 7 | C | 8 | C | 9 | * | G | 52 | C | 54 | ncSH | cWW | cSH | tWH | ncWS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CCUCU*AUG | 2 |
| UCCCU*ACCA | 2 |
| CCUCU*ACG | 2 |
| UCAAC*GGA | 1 |
| CCAAC*GGG | 1 |
| GCAAU*AGC | 1 |
| GCACU*AGC | 1 |
| CCACU*ACG | 1 |
| CCGCU*AUG | 1 |
| UCACU*AAA | 1 |
| GCUCU*AUC | 1 |
| CCACU*AUG | 1 |
| GCUCC*GUC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CUC*U | 4 |
| CAA*G | 3 |
| CCC*CC | 2 |
| CUC*C | 2 |
| CAC*G | 1 |
| CAC*C | 1 |
| CGC*U | 1 |
| CAC*A | 1 |
| CAC*U | 1 |
- Annotations
-
- C-loop (16)
- Basepair signature
- cWW-cWS-cSH-tWH-cWW-L
- Heat map statistics
- Min 0.11 | Avg 0.23 | Max 0.57
Coloring options: