Motif IL_63717.1 Version IL_63717.1 of this group appears in releases 0.1 to 0.3
#S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 8 | 9 | 1-9 | 2-8 | 4-7 | 5-6 | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | IL_2ZJR_052 | 2ZJR | 0.2461 | 1 | UAA/GAN (H) | X | LSU rRNA | C | 1593 | U | 1594 | A | 1595 | A | 1596 | A | 1597 | * | U | 1431 | G | 1432 | A | 1433 | G | 1435 | cWW | tWH | tHS | cWW |
2 | IL_2ZJR_032 | 2ZJR | 0.2090 | 1 | UAA/GAN (H) | X | LSU rRNA | C | 1009 | U | 1010 | A | 1011 | A | 1012 | G | 1013 | * | C | 1164 | G | 1165 | A | 1166 | G | 1168 | cWW | tWH | tHS | cWW |
3 | IL_1S72_038 | 1S72 | 0.0000 | 1 | UAA/GAN (H) | 0 | LSU rRNA | U | 1095 | U | 1096 | A | 1097 | A | 1098 | G | 1099 | * | C | 1257 | G | 1258 | A | 1259 | A | 1261 | cWW | tWH | tHS | cWW |
4 | IL_1S72_052 | 1S72 | 0.0988 | 3 | UAA/GAN (H) | 0 | LSU rRNA | C | 1456 | U | 1457 | A | 1458 | A | 1459 | G | 1460 | * | C | 1483 | G | 1484 | A | 1485 | G | 1489 | cWW | tWH | tHS | cWW |
5 | IL_1S72_092 | 1S72 | 0.1544 | 1 | UAA/GAN (H) | 0 | LSU rRNA | G | 2754 | G | 2755 | U | 2756 | A | 2757 | G | 2758 | * | U | 2724 | G | 2725 | A | 2727 | C | 2728 | cWW | tHS | cWW | |
6 | IL_3F1H_035 | 3F1H | 0.3056 | 1 | A | 23S RRNA | C | 998 | U | 999 | A | 1000 | A | 1001 | G | 1002 | * | C | 1153 | G | 1154 | A | 1155 | G | 1157 | cWW | tWH | tHS | cWW | |
7 | IL_3F1H_050 | 3F1H | 0.4346 | 1 | A | 23S RRNA | C | 1351 | U | 1352 | A | 1353 | A | 1354 | G | 1355 | * | C | 1376 | G | 1377 | A | 1378 | G | 1380 | cWW | tWH | tHS | cWW | |
8 | IL_3F1H_057 | 3F1H | 0.6216 | 0 | A | 23S RRNA | A | 1469 | G | 1470 | A | 1471 | A | 1472 | G | 1473 | * | U | 1520 | G | 1521 | G | 1522 | U | 1523 | cWW | tHS | cWW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
CUAAG*CGAAG | 3 |
CUAAA*UGAUG | 1 |
UUAAG*CGAGA | 1 |
CUAAG*CGAAAUG | 1 |
GGUAG*UGUAC | 1 |
AGAAG*UGGU | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
UAA*GAA | 3 |
UAA*GAU | 1 |
UAA*GAG | 1 |
UAA*GAAAU | 1 |
GUA*GUA | 1 |
GAA*GG | 1 |
Release history
Parent motifs
This motif has no parent motifs.
Children motifs
Child motif | Common motif instances | Only in IL_63717.1 | Only in the child motif |
---|---|---|---|
IL_63717.2 Compare | IL_3F1H_035, IL_2ZJR_052, IL_1S72_052, IL_1S72_038, IL_2ZJR_032, IL_1S72_092, IL_3F1H_050 | IL_3F1H_057 | |
IL_90126.1 Compare | IL_3F1H_057 | IL_3F1H_035, IL_2ZJR_052, IL_1S72_052, IL_1S72_038, IL_2ZJR_032, IL_1S72_092, IL_3F1H_050 | IL_2ZY6_001, IL_3FTM_001, IL_1FJG_061, IL_3FTM_002, IL_3FS0_001 |
- Annotations
-
- UAA/GAN (H) (5)
- (3)
- Basepair signature
- Heat map statistics
- Min 0.10 | Avg 0.33 | Max 0.67
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