#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3 4 5break 6 7 8 91-92-84-75-6
1 IL_2ZJR_0522ZJR0.24611UAA/GAN (H)X LSU rRNAC1593U1594A1595A1596A1597*U1431G1432A1433G1435cWWtWHtHScWW
2 IL_2ZJR_0322ZJR0.20901UAA/GAN (H)X LSU rRNAC1009U1010A1011A1012G1013*C1164G1165A1166G1168cWWtWHtHScWW
3 IL_1S72_0381S720.00001UAA/GAN (H)0 LSU rRNAU1095U1096A1097A1098G1099*C1257G1258A1259A1261cWWtWHtHScWW
4 IL_1S72_0521S720.09883UAA/GAN (H)0 LSU rRNAC1456U1457A1458A1459G1460*C1483G1484A1485G1489cWWtWHtHScWW
5 IL_1S72_0921S720.15441UAA/GAN (H)0 LSU rRNAG2754G2755U2756A2757G2758*U2724G2725A2727C2728cWWtHScWW
6 IL_3F1H_0353F1H0.30561A23S RRNAC998U999A1000A1001G1002*C1153G1154A1155G1157cWWtWHtHScWW
7 IL_3F1H_0503F1H0.43461A23S RRNAC1351U1352A1353A1354G1355*C1376G1377A1378G1380cWWtWHtHScWW
8 IL_3F1H_0573F1H0.62160A23S RRNAA1469G1470A1471A1472G1473*U1520G1521G1522U1523cWWtHScWW

3D structures

Complete motif including flanking bases
SequenceCounts
CUAAG*CGAAG3
CUAAA*UGAUG1
UUAAG*CGAGA1
CUAAG*CGAAAUG1
GGUAG*UGUAC1
AGAAG*UGGU1
Non-Watson-Crick part of the motif
SequenceCounts
UAA*GAA3
UAA*GAU1
UAA*GAG1
UAA*GAAAU1
GUA*GUA1
GAA*GG1

Release history

Release0.10.20.3
Date2011-12-082011-12-082011-12-08
StatusNew id, no parentsExact matchExact match

Parent motifs

This motif has no parent motifs.

Children motifs

Child motifCommon motif instancesOnly in IL_63717.1Only in the child motif
IL_63717.2
Compare
IL_3F1H_035, IL_2ZJR_052, IL_1S72_052, IL_1S72_038, IL_2ZJR_032, IL_1S72_092, IL_3F1H_050IL_3F1H_057
IL_90126.1
Compare
IL_3F1H_057IL_3F1H_035, IL_2ZJR_052, IL_1S72_052, IL_1S72_038, IL_2ZJR_032, IL_1S72_092, IL_3F1H_050IL_2ZY6_001, IL_3FTM_001, IL_1FJG_061, IL_3FTM_002, IL_3FS0_001
Annotations
  • UAA/GAN (H) (5)
  • (3)
  • Basepair signature
    Heat map statistics
    Min 0.10 | Avg 0.33 | Max 0.67
    Help

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