Motif IL_64417.3 Version IL_64417.3 of this group appears in releases 3.88 to 3.88
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | break | 4 | 5 | 1-5 | 3-4 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_8C3A_508 | 8C3A | 0.3652 | 3 | 1 | LSU rRNA | U | 1030 | A | 1031 | A | 1032 | * | U | 1010 | G | 1014 | ncWW | ncWW | |
| 2 | IL_4ZC7_003 | 4ZC7 | 0.1607 | 2 | Decoding loop related | B+A | RNA duplex | C | 30 | G | 31 | U | 32 | * | A | 16 | G | 19 | cWW | ncWW |
| 3 | IL_2O3X_002 | 2O3X | 0.1116 | 2 | Decoding loop related | A+B | RNA (23-mer) | C | 7 | A | 8 | C | 9 | * | G | 39 | G | 42 | cWW | cWW |
| 4 | IL_2ET8_002 | 2ET8 | 0.1143 | 2 | Decoding loop related | A+B | RNA (22-mer) | C | 6 | A | 7 | C | 8 | * | G | 38 | G | 41 | cWW | cWW |
| 5 | IL_3C3Z_002 | 3C3Z | 0.0000 | 2 | Decoding loop related | B+A | HIV-1 subtype F genomic RNA | C | 15 | A | 16 | C | 17 | * | G | 7 | G | 10 | cWW | cWW |
| 6 | IL_3C3Z_003 | 3C3Z | 0.0720 | 2 | Decoding loop related | A+B | HIV-1 subtype F genomic RNA | C | 15 | A | 16 | C | 17 | * | G | 7 | G | 10 | cWW | cWW |
| 7 | IL_4PDQ_002 | 4PDQ | 0.1065 | 2 | A+B | RNA (23-mer) | C | 7 | A | 8 | C | 9 | * | G | 39 | G | 42 | cWW | cWW | |
| 8 | IL_4LFB_070 | 4LFB | 0.1108 | 2 | A | SSU rRNA | 5MC | 1407 | A | 1408 | C | 1409 | * | G | 1491 | G | 1494 | cWW | cWW | |
| 9 | IL_1ZZ5_001 | 1ZZ5 | 0.1280 | 2 | Decoding loop related | B+A | RNA (14-mer) | C | 26 | A | 27 | C | 28 | * | G | 7 | G | 10 | cWW | cWW |
| 10 | IL_1ZZ5_003 | 1ZZ5 | 0.1662 | 2 | Decoding loop related | D+C | RNA (14-mer) | C | 26 | A | 27 | C | 28 | * | G | 7 | G | 10 | cWW | cWW |
| 11 | IL_5Z1I_003 | 5Z1I | 0.3516 | 2 | Decoding loop related | A | RNA (21-mer) | C | 7||||8_555 | G | 8||||8_555 | C | 9||||8_555 | * | G | 16 | G | 19 | cWW | cWW |
| 12 | IL_5Z1I_002 | 5Z1I | 0.3516 | 2 | Decoding loop related | A | RNA (21-mer) | C | 7 | G | 8 | C | 9 | * | G | 16||||8_555 | G | 19||||8_555 | cWW | cWW |
| 13 | IL_1T0E_001 | 1T0E | 0.2986 | 2 | Decoding loop related | C+A | RNA (17-mer) | C | 16 | A | 17 | C | 18 | * | G | 7 | G | 10||A | cWW | cWW |
| 14 | IL_1ZX7_005 | 1ZX7 | 0.4041 | 2 | Decoding loop related | F+E | RNA (14-mer) | C | 26 | A | 27 | C | 28 | * | G | 7 | G | 10 | cWW | cWW |
| 15 | IL_1ZX7_003 | 1ZX7 | 0.3090 | 2 | Decoding loop related | D+C | RNA (14-mer) | C | 26 | A | 27 | C | 28 | * | G | 7 | G | 10 | cWW | cWW |
| 16 | IL_8UO6_002 | 8UO6 | 0.2534 | 2 | B | HIV-1 Rev Response Element Stem-Loop II with tRNA scaffold | C | 41 | G | 42 | C | 43 | * | G | 60 | G | 63 | cWW | cWW | |
| 17 | IL_5J7L_364 | 5J7L | 0.1970 | 2 | AA | SSU rRNA | 5MC | 1407 | A | 1408 | C | 1409 | * | G | 1491 | G | 1494 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CAC*GAAG | 10 |
| (5MC)AC*GAAG | 2 |
| CGC*GAAG | 2 |
| UAA*UCUUG | 1 |
| CGU*AAAG | 1 |
| CGC*GACG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| A*AA | 12 |
| G*AA | 3 |
| A*CUU | 1 |
| G*AC | 1 |
Release history
| Release | 3.88 |
|---|---|
| Date | 2024-09-11 |
| Status | Updated, 2 parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Decoding loop related (12)
- Basepair signature
- cWW-L-cWW
- Heat map statistics
- Min 0.00 | Avg 0.33 | Max 0.89
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