Motif IL_64812.1 Version IL_64812.1 of this group appears in releases 3.91 to 3.94
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 1-7 | 3-6 | 4-5 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_2O3Y_003 | 2O3Y | 0.1272 | 2 | B+A | RNA (23-mer) | C | 30 | G | 31 | C | 32 | U | 33 | * | A | 15 | A | 17 | G | 19 | cWW | cWS | cWW |
| 2 | IL_2OE5_002 | 2OE5 | 0.0000 | 2 | A+B | RNA (16-mer) + RNA (17-mer) | C | 1407 | G | 1408 | C | 1409 | U | 1410 | * | A | 1490 | A | 1492 | G | 1494 | cWW | cWS | cWW |
| 3 | IL_2OE8_002 | 2OE8 | 0.0451 | 2 | A+B | RNA (16-mer) + RNA (17-mer) | C | 1407 | G | 1408 | C | 1409 | U | 1410 | * | A | 1490 | A | 1492 | G | 1494 | cWW | cWS | cWW |
| 4 | IL_2O3V_003 | 2O3V | 0.1583 | 2 | B+A | RNA (23-mer) | C | 30 | G | 31 | C | 32 | U | 33 | * | A | 15 | A | 17 | G | 19 | cWW | cWS | cWW |
| 5 | IL_3MEI_004 | 3MEI | 0.1906 | 2 | B+A | RNA (23-mer) | C | 7 | G | 8 | C | 9 | C | 10 | * | G | 13 | C | 15 | G | 17 | cWW | cWS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CGCU*AAAAG | 4 |
| CGCC*GCCUG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GC*AAA | 4 |
| GC*CCU | 1 |
- Annotations
-
- (5)
- Basepair signature
- cWW-L-cWS-cWW
- Heat map statistics
- Min 0.05 | Avg 0.13 | Max 0.25
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