Motif IL_65653.1 Version IL_65653.1 of this group appears in releases 3.85 to 3.89
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | break | 11 | 12 | 13 | 14 | 15 | 16 | 1-6 | 1-16 | 2-7 | 2-15 | 3-13 | 8-13 | 9-12 | 10-11 | 13-14 | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_8HZL_005 | 8HZL | 0.0924 | 2 | B | RNA (84-MER) | G | 20 | A | 21 | U | 23 | G | 24 | A | 26 | A | 27 | A | 28 | C | 29 | A | 30 | G | 31 | * | C | 66 | G | 67 | A | 68 | C | 69 | A | 70 | C | 71 | tSW | cWW | tHW | tWW | tWH | tHS | cWW | cSH | |
| 2 | IL_8HZL_004 | 8HZL | 0.0000 | 2 | B | RNA (84-MER) | G | 5 | A | 6 | U | 8 | G | 9 | A | 11 | A | 12 | A | 13 | C | 14 | A | 15 | G | 16 | * | C | 75 | G | 76 | A | 77 | C | 78 | A | 79 | C | 80 | tSW | cWW | tHW | tWW | tWH | tHS | cWW | cSH | |
| 3 | IL_8HZL_006 | 8HZL | 0.0796 | 2 | B | RNA (84-MER) | G | 35 | A | 36 | U | 38 | G | 39 | A | 41 | A | 42 | A | 43 | C | 44 | A | 45 | U | 46 | * | A | 57 | G | 58 | A | 59 | C | 60 | A | 61 | C | 62 | tSW | cWW | tHW | tWW | tWH | ncWW | ntHS | cWW | cSH |
| 4 | IL_8HZE_002 | 8HZE | 0.0890 | 2 | B | RNA (36-MER) | G | 5 | A | 6 | U | 8 | G | 9 | A | 11 | A | 12 | A | 13 | C | 14 | A | 15 | U | 16 | * | A | 27 | G | 28 | A | 29 | C | 30 | A | 31 | C | 32 | tSW | cWW | tHW | tWW | tWH | cWW | cSH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GAUUGUAAACAG*CGACAC | 2 |
| GAUUGUAAACAU*AGACAC | 2 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AUUGUAAACA*GACA | 4 |
- Annotations
-
- (4)
- Basepair signature
- cWW-tSW-tHW-tWW-tWH-cSH-L-L-tHS-L-cWW-L
- Heat map statistics
- Min 0.08 | Avg 0.07 | Max 0.12
Coloring options: